Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0980 ATGTATCAAACCAAGGGTAGTGATGAAAACATGGTCCTTTCCTCAGAGGATTCTTCATCCCCAGATGAGACTGAGTGTCACCTTCAATTGGGTCTCTCCTTGTCCCTCTCTCCCTATGCCACTTCTTCTTTAAGCAGCAGAAGCAGGACTAGTTCTCATTCTCATTCTGTTCTCACCAATAACGCTCCCACCAGTCAAGTAGTTGGATGGCCCCCTCTCAGAGCATATAGGATGAACAGCTATAATAGCCATGCAAAATCCCAAGTCACTGAAGTATTCAATTCTATGGTTGAGAACAGTAAGGCCAATATTGCTGTGGTAAGGAAGAGTTCTGACAATGGCAGTGTTGATAATAGTATCATTGGCAAAGAAAACAGAAACCCCAGGACCAGGAGTTCCCTGTTTGTGAAAGTAAAAATGGATGGGGTACCAATTGGAAGGAAGGTTGATTTAAGTGCTCATAGTTCTTATGAAACCTTAGCTCAAAGCTTGGAGGATATGTTTAATGAACCAAATACAGTTCTCACTTGCAAAGTTGGACTAAATGGAGTGAATCATGGTATTATAGCTGGAGCAGATAGGCACTCAAAATTGTTTGATGGATCTTCCAACTTTGTGCTTACTTATGAAGACAAGGAAGGAGACTGGATGCTTGTTGGAGATGTTCCTTGGTGGATGTTCATTAGCTCTGTTAGGAGGCTAAGAATCATGAGGACATCTGAGGCTAATGGACTTGATTGGAAGAACAGAACAGCAGATTGA 762 0.4213 MYQTKGSDENMVLSSEDSSSPDETECHLQLGLSLSLSPYATSSLSSRSRTSSHSHSVLTNNAPTSQVVGWPPLRAYRMNSYNSHAKSQVTEVFNSMVENSKANIAVVRKSSDNGSVDNSIIGKENRNPRTRSSLFVKVKMDGVPIGRKVDLSAHSSYETLAQSLEDMFNEPNTVLTCKVGLNGVNHGIIAGADRHSKLFDGSSNFVLTYEDKEGDWMLVGDVPWWMFISSVRRLRIMRTSEANGLDWKNRTAD* 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0980 253 Gene3D - 128 251 - -
Lja1g0980 253 MobiDBLite consensus disorder prediction 42 64 - -
Lja1g0980 253 ProSiteProfiles PB1 domain profile. 133 241 IPR000270 GO:0005515
Lja1g0980 253 PANTHER AUXIN-RESPONSIVE PROTEIN IAA11 9 247 - -
Lja1g0980 253 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 9 247 IPR003311 GO:0005634|GO:0006355
Lja1g0980 253 MobiDBLite consensus disorder prediction 1 27 - -
Lja1g0980 253 Pfam AUX/IAA family 46 245 IPR033389 -
Lja1g0980 253 SUPERFAMILY CAD & PB1 domains 127 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0980 Lja-Chr1 9734703 9738009 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0980 93 252 B3 DNA Binding Superfamily AT1G59750 28.395 2.79e-11 61.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Lja1g0980 AUX_IAA 4.4e-59 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0980 K14484 - gmx:100779400 278.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0980 1 9734703 9738009 Lja1g0980 1 9734703 9738009 ECH
Lja1g0980 1 9734703 9738009 Lja5g2109 5 28747895 28752186 PCT