Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0979 ATGGAGAAGAACATGATGCCAATGAAAACCCATTTTTTCATCTTCTTCTTCTGTTACATTGGTTGTTTCTCTTACAGTTTTGCTGCTGCAAATGATGAATTATCAGCTTTGCTTTCAATAAAAGCAGGCCTTGTTGATCCATTGAACACACTGCAAGATTGGAAATTGGTCGACAAAGCACTAGGAAATGATGCAGCTCATTGTAACTGGAATGGAGTCACATGCAACTCAGCTGGAGCAGTAGAGAAGCTTGATCTCTCCCACAAGAATCTAAGCGGCAGAGTATCCGATGATTTAACAAGACTTAAAAGTCTTACTTCTCTCAACTTGTGTTGCAATGCTTTCTCATCAACATTGCCAAAATCCATAGCCAATCTCACCACACTGAACAGTCTTGATGTGAGCCAGAATTCCTTCATTGGTGACTTTCCATTAGGCCTCGGAAGGGCGTGGAGACTTACAACCTTTAACGCATCCAGCAATGAGTTCACGGGTCCTCTTCCGGAGGACCTGGGAAATGCTTCTTCCTTAGAGATGCTGGATCTCAGAGGTAGCTTCTTCCAAGGGTCAGTTCCAAAATCATTCAGTAACTTGCACAAGTTGAAGTTCCTTGGTCTATCTGGGAATAATCTCACTGGGAAAATTCCTGGAGAGCTGGGACAACTTTCATCACTGGAGTATATGATCCTTGGATATAATGAATTTGAAGGTGGGATTCCAGAAGATTTTGGAAATCTCACCAGTCTTAAGTATGTTGATTTAGCAGTATCCAATCTTGGTGGTGAGGTTCCAGCTGCATTAGGAAAGCTCAAGTTATTGGATACATTTTTCTTATACAACAACAATTTTGAAGGGAGAATTCCACCAGCAATTGGCAACATGACTTCTTTGCAGTTTCTGGATCTTTCTGATAACATGTTGTCAGGAAAAATTCCAGCTGAAATAAGTCAGTTGAAGAATTTAAAGCTTCTTAACTTCATGGGAAACAAGCTATCTGGTTTCGTTCCTTCTGGCCTTGAGGACTTGCCTCAATTGGAGGTGCTTGAGCTATGGAATAATTCCTTGTCTGGGCCGCTTCCTAGTAACCTTGGCAAGAATTCACCATTGCAATGGTTGGATTTATCATCCAATTCATTCTCTGGAGAGATTCCAGAGAATCTTTGCAGCATAGGTAATCTCACCAAGCTTATACTTTTCAACAATGCCTTCTCTGGTTCAATTCCTTCAAACCTTTCAATGTGTCCTTCACTAGTTCGAGTCCGAATGCAGAACAATTTTCTTTCTGGGACAGTTCCTGTGGGTTTTGGCAAGCTTGGGAAGCTTCAAAGGTTAGAATTGGCTAACAATAGTCTCTCTGGTGGAATTCCAGATGACCTTGCTTTTTCCACAACCCTTTCTTTCATTGATCTCTCAAGAAACAAGCTCCACTCTTCTCTTCCTTCCACCATTTTTTCCATTCCAAACCTGCAAGCTTTCATGGTCTCCAATAACAACTTGGAAGGTGAAATCCCAGACCAGTTTCAGGACTGTCCCTCACTCACTGTTCTTGATCTCTCCTCAAATCATTTATCCGGAAACATTCCGGCAAGCATCGCTTCATGTGAGAAATTGGTGAATTTGAACCTACAAAATAACCGATTAGTTGGAGAAATCCCAAATGCATTAGCTAACATGCCTTCATTAGCCATGCTTGATCTTTCCAACAATTCTCTTACCGGTCATATACCTGAAAGCTTTGGTGTTTCTCCAGCTCTGGAGACACTCAATATTTCATACAACAAGCTCGAAGGTTCTGTCCCGATAAACGGTATGCTAAGAACGATAAGCCCGAATAATCTTGTCGGAAATGCAGGCTTATGTGGTGGTGTACTCCTTCCATGTGATCAGAACTCTGCATACTCATCAAGGCATGGAAGCTTACATGCAAAGCACATTATTACAGGATGGATCATTGGAATATCATCAATCCTAGCCCTCGGAATCACAATTTTGGTAGCAAGATCTTTATACACAAGATGGTACAATGATGGATTTTGCTTCAATGAAAGATTTTACAAGGGTAGTAGCAAAGGGTGGCCCTGGAGATTGATGGCATTTCAGAGGCTTGGTTTTACAAGCACTGACATTCTAGCTTGCATTAAAGAAACCAATGTGATTGGCATGGGAGGTACCGGGGTTGTTTACAAGGCTGAGGTACCGCATTCAAGTACAGTTGTGGCGGTGAAAAAACTGTGGAGATCAGGAACAGATGTTGAAGCAGGAAGCAGTGATGACCTTGTGGGAGAGGTGAACGTTTTAGGGAGGCTAAGGCATAGGAACATTGTTAGACTGTTAGGATTTCTTTATAATGACGCTGATCTGATGATAGTTTATGAATTCATGCACAATGGAAACCTCGGAGACACCTTACATGGTAGACAGGCAACAAGATTGCTTGTAGACTGGGTTTCGCGGTATAACATAGCTCTAGGAGTGGCACAAGGACTTGCTTATCTTCATCATGATTGTCATCCACCCGTTATCCATAGAGATATCAAGTCAAACAATATATTGCTCGATGCAGATCTTGAGGCAAGGATAGCAGATTTTGGCTTAGCCAAGATGATCATCAGGAAGAATGAAACAGTCTCCATGGTTGCTGGATCCTATGGCTACATTGCCCCTGAATATGGATATGCCTTGAAGGTGGATGAAAAGATTGATGTTTACAGTTATGGAGTAGTTTTGTTGGAGCTTCTCACTGGAAAACGGCCTTTAGATCCGGAGTTTGGAGAGTCTGTAGACATAGTAGAGTGGATTAGAAGGAAGATTAGACACAACAAATCTCTAGAAGAAGCATTAGACCCCAGTGTAGGAAACAGCAACTATGTTCTAGATGAGATGGTTTTAGTTCTAAGAATAGCAATTCTCTGCACTGCTAAGTTCCCCAAGGACAGACCAACCATGAGGGATGTCATAATGATGCTTGAAGAGGCAAAGCCTAGGAGAAAGAGCAGTAGCAACAATGAAACAGTAGCAGCTAACAATAACCAGATGTCAGTTTTTAGCACATCGCCGGTTAATGGCCTTCTGTAA 3075 0.4192 MEKNMMPMKTHFFIFFFCYIGCFSYSFAAANDELSALLSIKAGLVDPLNTLQDWKLVDKALGNDAAHCNWNGVTCNSAGAVEKLDLSHKNLSGRVSDDLTRLKSLTSLNLCCNAFSSTLPKSIANLTTLNSLDVSQNSFIGDFPLGLGRAWRLTTFNASSNEFTGPLPEDLGNASSLEMLDLRGSFFQGSVPKSFSNLHKLKFLGLSGNNLTGKIPGELGQLSSLEYMILGYNEFEGGIPEDFGNLTSLKYVDLAVSNLGGEVPAALGKLKLLDTFFLYNNNFEGRIPPAIGNMTSLQFLDLSDNMLSGKIPAEISQLKNLKLLNFMGNKLSGFVPSGLEDLPQLEVLELWNNSLSGPLPSNLGKNSPLQWLDLSSNSFSGEIPENLCSIGNLTKLILFNNAFSGSIPSNLSMCPSLVRVRMQNNFLSGTVPVGFGKLGKLQRLELANNSLSGGIPDDLAFSTTLSFIDLSRNKLHSSLPSTIFSIPNLQAFMVSNNNLEGEIPDQFQDCPSLTVLDLSSNHLSGNIPASIASCEKLVNLNLQNNRLVGEIPNALANMPSLAMLDLSNNSLTGHIPESFGVSPALETLNISYNKLEGSVPINGMLRTISPNNLVGNAGLCGGVLLPCDQNSAYSSRHGSLHAKHIITGWIIGISSILALGITILVARSLYTRWYNDGFCFNERFYKGSSKGWPWRLMAFQRLGFTSTDILACIKETNVIGMGGTGVVYKAEVPHSSTVVAVKKLWRSGTDVEAGSSDDLVGEVNVLGRLRHRNIVRLLGFLYNDADLMIVYEFMHNGNLGDTLHGRQATRLLVDWVSRYNIALGVAQGLAYLHHDCHPPVIHRDIKSNNILLDADLEARIADFGLAKMIIRKNETVSMVAGSYGYIAPEYGYALKVDEKIDVYSYGVVLLELLTGKRPLDPEFGESVDIVEWIRRKIRHNKSLEEALDPSVGNSNYVLDEMVLVLRIAILCTAKFPKDRPTMRDVIMMLEEAKPRRKSSSNNETVAANNNQMSVFSTSPVNGLL* 1025
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0979 1024 Gene3D Ribonuclease Inhibitor 32 151 IPR032675 -
Lja1g0979 1024 SMART serkin_6 713 989 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g0979 1024 ProSiteProfiles Protein kinase domain profile. 713 996 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g0979 1024 ProSitePatterns Serine/Threonine protein kinases active-site signature. 840 852 IPR008271 GO:0004672|GO:0006468
Lja1g0979 1024 SUPERFAMILY L domain-like 67 356 - -
Lja1g0979 1024 ProSitePatterns Protein kinases ATP-binding region signature. 719 743 IPR017441 GO:0005524
Lja1g0979 1024 SMART LRR_typ_2 342 366 IPR003591 -
Lja1g0979 1024 SMART LRR_typ_2 102 126 IPR003591 -
Lja1g0979 1024 SMART LRR_typ_2 558 582 IPR003591 -
Lja1g0979 1024 SMART LRR_typ_2 198 222 IPR003591 -
Lja1g0979 1024 SMART LRR_typ_2 510 534 IPR003591 -
Lja1g0979 1024 SMART LRR_typ_2 486 509 IPR003591 -
Lja1g0979 1024 SMART LRR_typ_2 438 462 IPR003591 -
Lja1g0979 1024 SMART LRR_typ_2 294 318 IPR003591 -
Lja1g0979 1024 PANTHER UNNAMED PRODUCT 12 1003 - -
Lja1g0979 1024 PRINTS Leucine-rich repeat signature 513 526 - -
Lja1g0979 1024 PRINTS Leucine-rich repeat signature 558 571 - -
Lja1g0979 1024 SUPERFAMILY Protein kinase-like (PK-like) 709 990 IPR011009 -
Lja1g0979 1024 Gene3D Phosphorylase Kinase; domain 1 705 793 - -
Lja1g0979 1024 Pfam Leucine rich repeat N-terminal domain 30 76 IPR013210 -
Lja1g0979 1024 Pfam Leucine rich repeat 536 595 IPR001611 GO:0005515
Lja1g0979 1024 Pfam Leucine rich repeat 479 523 IPR001611 GO:0005515
Lja1g0979 1024 Pfam Leucine rich repeat 176 234 IPR001611 GO:0005515
Lja1g0979 1024 SUPERFAMILY RNI-like 287 597 - -
Lja1g0979 1024 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 12 1003 - -
Lja1g0979 1024 Pfam Protein kinase domain 715 985 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g0979 1024 Gene3D Ribonuclease Inhibitor 322 631 IPR032675 -
Lja1g0979 1024 Gene3D Ribonuclease Inhibitor 244 321 IPR032675 -
Lja1g0979 1024 Gene3D Ribonuclease Inhibitor 152 243 IPR032675 -
Lja1g0979 1024 Gene3D Transferase(Phosphotransferase) domain 1 794 1016 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0979 Lja-Chr1 9730662 9734193 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0979 6 1024 Receptor kinase-like Gene Family AT1G08590 58.574 0.0 1167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Lja1g0979 Pkinase 8.9e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0979 - - gmx:100789665 1726.06