Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0976 ATGGCCACCGTTAATGGAATCTTGTGGATCCTCAGATTCCCAGTTTTGGAACTGGTGCCAATCTGTGCTAACTTACTTCTTCTTCTTCTCTATCTCCTTGCTGTGATTCTGGTGCGCGTGCGGAGAAGAGTTCGATTTGGTAAGGAGAGTAGTACGGTTGGCAATGCCGGTGCTGGTGGTGGTGTTGATGGAGAAGCACGTGGTGAGGTGGTTCTTCGAATCGGGACATGGTTCAAGTTATCAGTGTTGTCCTGTTTCTATGTTTTGCTGGTGCAAGTTTTTGTGTTGGGGTTTGATGGGGTTGCTTTGATTAAGAGAGGGTCTAAGGGAGAATCTCTGGATTGGTCTCTTCTCGCTGTGCCGGTTGTGCAGGGTTTAGCTTGGATTGTGTTGAGCTTCTCTGCTTTGCATTGCAAATTCAAGGCTTCTGAGAAGTTTCCAATTTTGGTGAGAGTTTGGTGGTTTGTGCTTTTTGTCATTTGCTTGTGTACTTTATATGTTGATGGGAGAGGGCTTTGGATGGAAGGTTCTAGAAGCCTTCAATCTCATGTCGTCGCGAATTTCGCCGCCACCCCTGCTCTTGCCTTTTTGTGTATGGCTGCAATTAGGGGTGTTTCTGGCATACAAGTTTTCAGAAACTCTGAGGCTCAGCAGTCATTACTTGTTGAAGAAGAAGAACCAGGGTGTCTCAAGGTTACTGCTTATGCTGAAGCTGGACTGTTCAGCTTGGCAACTCTGTCTTGGCTGAACTCACTTCTTTCAATTGGTGCAAAGAGACCACTTGACCTTAAGGACATTCCCCTTGTCGCACCGCAAGATCGAGCCAAAACCAATTACAAGATTCTGAATTCCAATTGGGAGAGATTGAAGGCTGAGAACATGTCTACTGCCCAGCAGCCTTCATTAGCTTGGGCCCTTTTAAAGTCATTCTGGAAGGAGGCAGCTTGTAATGCTATCTTCGCTGGCGTTACGACTCTAGTCTCATATGTAGGTCCATACATGATAAGTTACTTCGTTGATTACTTGGTTGGTAAAGAGACTTTCCCTCATGAGGGCTATGTCCTTGCAGGGATATTCTTTGTTGCAAAGCTTGTGGAGACATTCACAACTAGGCAGTGGTATCTAGGAGTGGACATCTTGGGTATGCATGTCAGGTCTGCTTTAACAGCAATGGTGTACAGGAAGGGCCTCAGGCTATCGAGCTTGGCCAAGCAAAGTCACACGAGTGGAGAAATTGTTAACTACATGGCTATTGATGTTCAGAGAGTTGGGGATTACTCTTGGTACCTTCATGACATGTGGATGCTTCCTCTGCAGATTGTTCTTGCCCTTGCAATTTTGTATAAGAATGTTGGAATTGCTTCTGTTGCGACGCTGATCGCTACAATCATTTCGATCGTTGTGACCATTCCTATCGCGAGGATCCAGGAAGAATATCAAGACAAGTTAATGACTGCTAAGGATGAAAGGATGAGAAAAACATCTGAGTGCCTGAGGAATATGAGGATTCTCAAGCTGCAAGCTTGGGAGGATAGGTATCGGATAAGATTGGAGGAAATGCGCGGAGTAGAGTTCACTTGGCTTCGGAGAGCGCTCTATTCTCAGGCTTTCATAACTTTCATTTTCTGGAGCTCACCTATATTTGTTTCAGCCGTTACTTTCGCTACTTCGATATTGTTGGGGGGTCAGCTTACTGCAGGTGGTGTGCTTTCTGCTCTGGCTACTTTCCGGATCCTCCAAGAGCCTTTGAGGAATTTTCCAGACTTGGTATCAACAATGGCTCAGACAAAAGTCTCGCTCGATCGAATTTCCTGTTTCCTGCTGGAGGAAGAATTGCAAGAAGATGCAACTATCATCTTGCCACAAGGCATTTCTAACATTGCTTTAGAAATTCAGGATGGTGTTTTCAGTTGGGACACTTCTTCATCTTCTAGGCCTACTCTATCAGGGATAAATATGAAAGTTGAAAAAGGAATGCATGTGGCTGTTTGTGGCATGGTGGGTTCAGGGAAATCGAGTTTTCTTTCTTGCATCCTCGGAGAGGTTCCTAAGCTTTCTGGTGAAGTCAGAGTGTGTGGTTCTGTTGCATATGTCTCGCAATCAGCCTGGATACAATCAGGAAATATAGAAGAAAACGTCCTCTTCGGGAGCCCAATGGACAAAGCAAAGTACAAGAGTGTTCTTCACGCTTGTTCACTGAAAAAAGATCTAGAGCTTTTCTCACATGGAGATCAGACAATCATTGGTGATAGAGGTATAAACCTGAGTGGTGGTCAGAAGCAGCGGGTTCAGCTTGCCCGGGCACTCTACCAAGATGCTGATATTTATCTTCTTGATGATCCCTTCAGTGCAGTTGACGCCCACACTGGATCAGAATTGTTCAGGGAGTATATAATGACAGCACTAGCCGATAAAACAGTCATTTTTGTGACTCATCAAGTTGAATTTCTTCCTGCTGCTGATTTGATACTGGTTCTCAAAGAAGGCTGCATCATACAAGCTGGAAAGTATGATGATCTTTTACAAGCTGGAACAGATTTCAATGCTCTAGTTTCAGCTCACCATGAGGCCATAGAGGCTATGGATATCCCCACTCACTCCTCTGAAGATTCAGATGAAAATTTATCGTTGGAAGCAGCTGTTATGACCAATAAGAAAGCCATTTGTTCTTCAAATGATATTGACAATTTGGCTAAGGAAGTGCAAGAAGGATCTTCAGCGTCAGAACAAAAAGTAATCAAGGAGAAGAAGAAAGCAAAACGATCTAGAAAAAAACAGCTCGTTCAGGAAGAGGAGAGGGTTAGAGGCAGAGTTAGTATGAAGGTGTACCTTTCATACATGGCAGCAGCATATAAAGGTTTATTGATTCCGCTCATAATCATTGCACAAGCCTTATTTCAGTTCCTTCAGATTGCTAGTAATTGGTGGATGGCTTGGGCTAACCCTCAAACCGAAGGAGACATGCCTAAAGTAACTCCGGCGGTTCTTCTTCTTGTTTACATGGCTCTAGCTTTTGGAAGCTCGTGGTTTATTTTTGTAAGGGCGGTTCTGGTGGCTACATTTGGTCTTGCAGCTGCACAGAAGCTGTTTTTGAAGATGCTTAGAAGTGTTTTCCATGCACCGATGTCTTTCTTCGATTCTACACCAGCTGGAAGGATCTTGAATCGGGTATCAATTGACCAAAGTGTTGTGGATCTTGACATTCCTTTTAGACTTGGCGGGTTTGCTTCAACAACAATACAGCTTATTGGTATTGTTGGTGTGATGACAGGAGCTACATGGCAAGTTTTGCTCTTAGTCATCCCAATGGCCATTGCTTGTTTGTGGATGCAGAAATACTACATGGCTTCCTCAAGGGAACTGGTCCGAATTGTAAGCATACAGAAATCACCAATTATACATCTTTTTGGTGAATCTATTGCTGGAGCGTCCACAATCAGAGGTTTTGGACAAGAAAAAAGGTTCGTGAAGCGGAACCTCTATCTTCTTGATTGTTTCGCACGACCATTCTTCTGCAGTCTTGCTGCTATTGAGTGGCTCTGTCTGCGCATGGAGTTGCTGTCAACCTTTGTATTTTCTTTCTGCATGGTCTTACTTGTGAGCTTTCCCCGTGGAACAATTGACCCTAGCATGGCTGGACTTGCTGTGACGTATGGCCTGAATTTAAATGCACGTCTGTCACGGTGGATACTTAGCTTTTGCAAACTTGAAAACAAAATTATATCTATTGAAAGAATTTATCAGTACAGCCAAATTCCTAGTGAAGCGCCGGCAATTATTGAAGATTCTCGCCCTCCATCGTCATGGCCTGAAAACGGGACAATTGAAATAATTGATTTGAAGGTCCGTTACAAGGAGAATCTTCCTATGGTGCTTCATGGAGTATCCTGCACATTTCCTGGAGGAAAGAAGATAGGAATAGTTGGACGAACTGGCAGTGGCAAATCTACTTTGATTCAAGCTTTATTTCGATTGATTGAGCCAGCAAGTGGAAGTATCCTCATAGACAACATAAATATTTCAGATATTGGTCTTCATGACCTTCGAAGCCATCTCAGTATTATACCACAAGATCCTACCTTATTTGAAGGGACCATTCGAGGAAATCTTGATCCTCTCGAGGAGCACTCGGATAGAGAGATTTGGGAGGCACTTGGTAAATCTCAGCTTGGAGAGATTATCCGTGACAAAGGACAAAAGCTTGATACACCAGTTCTTGAAAATGGAGATAATTGGAGTGTAGGACAACGGCAACTTGTTTCTCTGGGTCGCGCACTACTGAAGCAGTCAAAAATACTTGTGCTTGATGAAGCAACAGCATCAGTTGATACCGCAACTGATAACCTTATCCAGAAGATTATCCGAACGGAGTTCAAGGATTGCACCGTATGCACCATCGCGCATCGCATTCCCACTGTCATTGACAGTGATCTAGTTCTGGTGCTCAGTGATGGCCGAGTCGCGGAGTTTGACACTCCTTCAAGACTATTAGAGGACCGGTCATCCATGTTTCTAAAGTTGGTAAGCGAGTATTCGTCACGGTCAAGCGGTATACCAGAATTTTAG 4566 0.4402 MATVNGILWILRFPVLELVPICANLLLLLLYLLAVILVRVRRRVRFGKESSTVGNAGAGGGVDGEARGEVVLRIGTWFKLSVLSCFYVLLVQVFVLGFDGVALIKRGSKGESLDWSLLAVPVVQGLAWIVLSFSALHCKFKASEKFPILVRVWWFVLFVICLCTLYVDGRGLWMEGSRSLQSHVVANFAATPALAFLCMAAIRGVSGIQVFRNSEAQQSLLVEEEEPGCLKVTAYAEAGLFSLATLSWLNSLLSIGAKRPLDLKDIPLVAPQDRAKTNYKILNSNWERLKAENMSTAQQPSLAWALLKSFWKEAACNAIFAGVTTLVSYVGPYMISYFVDYLVGKETFPHEGYVLAGIFFVAKLVETFTTRQWYLGVDILGMHVRSALTAMVYRKGLRLSSLAKQSHTSGEIVNYMAIDVQRVGDYSWYLHDMWMLPLQIVLALAILYKNVGIASVATLIATIISIVVTIPIARIQEEYQDKLMTAKDERMRKTSECLRNMRILKLQAWEDRYRIRLEEMRGVEFTWLRRALYSQAFITFIFWSSPIFVSAVTFATSILLGGQLTAGGVLSALATFRILQEPLRNFPDLVSTMAQTKVSLDRISCFLLEEELQEDATIILPQGISNIALEIQDGVFSWDTSSSSRPTLSGINMKVEKGMHVAVCGMVGSGKSSFLSCILGEVPKLSGEVRVCGSVAYVSQSAWIQSGNIEENVLFGSPMDKAKYKSVLHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFREYIMTALADKTVIFVTHQVEFLPAADLILVLKEGCIIQAGKYDDLLQAGTDFNALVSAHHEAIEAMDIPTHSSEDSDENLSLEAAVMTNKKAICSSNDIDNLAKEVQEGSSASEQKVIKEKKKAKRSRKKQLVQEEERVRGRVSMKVYLSYMAAAYKGLLIPLIIIAQALFQFLQIASNWWMAWANPQTEGDMPKVTPAVLLLVYMALAFGSSWFIFVRAVLVATFGLAAAQKLFLKMLRSVFHAPMSFFDSTPAGRILNRVSIDQSVVDLDIPFRLGGFASTTIQLIGIVGVMTGATWQVLLLVIPMAIACLWMQKYYMASSRELVRIVSIQKSPIIHLFGESIAGASTIRGFGQEKRFVKRNLYLLDCFARPFFCSLAAIEWLCLRMELLSTFVFSFCMVLLVSFPRGTIDPSMAGLAVTYGLNLNARLSRWILSFCKLENKIISIERIYQYSQIPSEAPAIIEDSRPPSSWPENGTIEIIDLKVRYKENLPMVLHGVSCTFPGGKKIGIVGRTGSGKSTLIQALFRLIEPASGSILIDNINISDIGLHDLRSHLSIIPQDPTLFEGTIRGNLDPLEEHSDREIWEALGKSQLGEIIRDKGQKLDTPVLENGDNWSVGQRQLVSLGRALLKQSKILVLDEATASVDTATDNLIQKIIRTEFKDCTVCTIAHRIPTVIDSDLVLVLSDGRVAEFDTPSRLLEDRSSMFLKLVSEYSSRSSGIPEF* 1522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0976 1521 SUPERFAMILY ABC transporter transmembrane region 304 609 IPR036640 GO:0005524|GO:0016021
Lja1g0976 1521 Pfam ABC transporter 1292 1440 IPR003439 GO:0005524
Lja1g0976 1521 Gene3D ABC transporter type 1, transmembrane domain 917 1256 IPR036640 GO:0005524|GO:0016021
Lja1g0976 1521 Gene3D ABC transporter type 1, transmembrane domain 287 609 IPR036640 GO:0005524|GO:0016021
Lja1g0976 1521 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 318 595 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lja1g0976 1521 CDD ABCC_MRP_domain2 1273 1493 - -
Lja1g0976 1521 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 69 1521 - -
Lja1g0976 1521 ProSitePatterns ABC transporters family signature. 755 769 IPR017871 GO:0005524
Lja1g0976 1521 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1266 1506 IPR027417 -
Lja1g0976 1521 CDD ABC_6TM_ABCC_D1 316 603 IPR044746 GO:0140359
Lja1g0976 1521 Gene3D - 1258 1510 IPR027417 -
Lja1g0976 1521 PANTHER MULTIDRUG RESISTANCE PROTEIN ABC TRANSPORTER FAMILY PROTEIN 69 1521 - -
Lja1g0976 1521 SMART AAA_5 1301 1486 IPR003593 -
Lja1g0976 1521 SMART AAA_5 657 838 IPR003593 -
Lja1g0976 1521 Pfam ABC transporter transmembrane region 958 1200 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lja1g0976 1521 Pfam ABC transporter transmembrane region 319 583 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lja1g0976 1521 Gene3D - 610 874 IPR027417 -
Lja1g0976 1521 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 958 1228 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lja1g0976 1521 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1275 1509 IPR003439 GO:0005524
Lja1g0976 1521 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 626 852 IPR027417 -
Lja1g0976 1521 SUPERFAMILY ABC transporter transmembrane region 955 1255 IPR036640 GO:0005524|GO:0016021
Lja1g0976 1521 CDD ABCC_MRP_domain1 629 829 - -
Lja1g0976 1521 CDD ABC_6TM_ABCC_D2 956 1250 IPR044726 GO:0140359
Lja1g0976 1521 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 629 853 IPR003439 GO:0005524
Lja1g0976 1521 Coils Coil 913 933 - -
Lja1g0976 1521 Pfam ABC transporter 648 782 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0976 Lja-Chr1 9706833 9714800 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0976 639 846 Calmodulin-binding Proteins AT2G36910 30.837 5.47e-20 95.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0976 - - gmx:100790550 2617.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0976 1 9706833 9714800 Lja1g0976 1 9706833 9714800 ECH
Lja1g0976 1 9706833 9714800 Lja5g2104 5 28657987 28667097 PCT