Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0973 ATGGCTGCGGCGTTCACTTGCTCTGCCGCCGACCTCCACCCTCTTCTGGGCACCGGGGCTAATGCTACGGCGGCGGCAGAGTTCATTTGTTCCCGGTTTGGTGCCATCTCGAACAAGTTCACTGACACCGCCTACGCCGTGGACAACACCTACCTCTTGTTCTCTGCTTACCTCGTCTTCGCCATGCAGCTTGGTTTCGCCATGCTCTGCGCCGGTTCCGTCCGTGCCAAGAACACCATGAACATCATGCTCACCAACGTTCTTGATGCCGCCACCGGTGGCATCTTCTTCTACATCTTCGGTTTCGCCTTGGCCTTTGGCACCCCATCAAATGGTTTCATCGGGAAGCACTTCTTTGGTCTCAACGAGTTTCCTTCCCCTTCTTTTGACTATGGATTCTTTCTTTATCAGTGGGCTTTCGCCATCGCCGCTGCGGGGATTACCAGTGGTTCGATTGCAGAGAGGACTCAGTTTGTTGCTTATTTGATTTACTCTTCGTTCTTGACTGGTTTGGTTTACCCGATTGTGGCACATTGGTTCTGGTCTTCTGATGGGTGGGGTTCCCCTGCAAGAACAGAGAATCTTCTGTTTGGTTCTGGTGTTATTGATTTTGCTGGCTCTGGTGTTGTGCATTTGGTGGGAGCAGTTGCAGGATTCTGGGGTGCTTTCATTGAAGGTCCTCGTATGGGAAGGTTTGATCATGCAGGGAAGCCTGTACCATTGAGGGGACACAGTGGAACACTTGTTGTTTTGGGGACATTCTTGTTGTGGTTTGGTTGGTATGGTTTTAACCCTGGTTCTTTTATTACTATCTTGAAGAGTTATGGTGAGAGTGGTTCTGGTAATTACTATGGACAATGGAGTGCAATTGGGAGGACTGCAGTGACAACAACACTAGCTGGATGCTCTGCTGCACTCACTACTCTGTTTGGGAAGAGATTGCAAACAGGACATTGGAATGTGACTGATGTTTGCAATGGTTTGCTTGGTGGGTTTGCTGCAATTACTTCAGGGTGTTCTGTTGTGGATCCTTGGGCTGCAATTATATGTGGATTTGTGGCAGCTTGGGTGCTGATTGGATGCAATGTGTTAGCTGAGAAGTTTCACTATGATGATCCTCTTGAGGCTGCACAGCTTCATGGAGGTTGTGGAACTTGGGGGATAATCTTCACTGCATTGTTTGCTAAGAAGCAGTATGTAAATGAGGTTTATGCTGGGCTTCCTGATAGGCCATATGGGCTTTTAATGGGTGGGGGTTGGAGGCTATTGGCTGCACATGTTGTGCAGATTTTGACTATTGCTGGTTGGGTGAGTGTTACAATGGGAGCTGTGTTCTTTGTGCTGCATAAGCTGAATCTGCTGAGGATTTCACCTGAGGAGGAGATGGCTGGTTTGGATATGACTAGTCATGGTGGATTGGCTTATGAGTATCATGAAGACGTGGGGTCTGTGCAAAAAGCTTTGGAAATTCGTGTTTGA 1479 0.4848 MAAAFTCSAADLHPLLGTGANATAAAEFICSRFGAISNKFTDTAYAVDNTYLLFSAYLVFAMQLGFAMLCAGSVRAKNTMNIMLTNVLDAATGGIFFYIFGFALAFGTPSNGFIGKHFFGLNEFPSPSFDYGFFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSFLTGLVYPIVAHWFWSSDGWGSPARTENLLFGSGVIDFAGSGVVHLVGAVAGFWGAFIEGPRMGRFDHAGKPVPLRGHSGTLVVLGTFLLWFGWYGFNPGSFITILKSYGESGSGNYYGQWSAIGRTAVTTTLAGCSAALTTLFGKRLQTGHWNVTDVCNGLLGGFAAITSGCSVVDPWAAIICGFVAAWVLIGCNVLAEKFHYDDPLEAAQLHGGCGTWGIIFTALFAKKQYVNEVYAGLPDRPYGLLMGGGWRLLAAHVVQILTIAGWVSVTMGAVFFVLHKLNLLRISPEEEMAGLDMTSHGGLAYEYHEDVGSVQKALEIRV* 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0973 492 Gene3D Ammonium transporter AmtB like domains 30 490 IPR029020 -
Lja1g0973 492 PANTHER AMMONIUM TRANSPORTER 1 486 - -
Lja1g0973 492 Pfam Ammonium Transporter Family 51 475 IPR024041 GO:0008519|GO:0016020|GO:0072488
Lja1g0973 492 PANTHER AMMONIUM TRANSPORTER 1 486 - -
Lja1g0973 492 ProSitePatterns Ammonium transporters signature. 203 228 IPR018047 GO:0008519|GO:0016020|GO:0072488
Lja1g0973 492 SUPERFAMILY Ammonium transporter 45 456 - -
Lja1g0973 492 TIGRFAM amt: ammonium transporter 48 475 IPR001905 GO:0008519|GO:0016020|GO:0072488
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0973 Lja-Chr1 9648281 9649933 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0973 1 491 Inorganic Solute Cotransporters AT4G28700 78.138 0.0 762
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0973 K03320 - jre:109020544 837.025