Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0970 ATGGCAACAACTCAAGGCCAAGTCATTACCTGCAAAGCTGCGGTGGCCTGGGAACCCAACAAGCCTTTGACCATTGAAGACGTTCAGGTGGCTCCGCCGCAGGCCGGTGAGGTTCGAGTCAAAATCCTCTACACCGCTCTCTGTCACACCGATGCTTACACCTGGAGTGGCAAGGATCCAGAAGGTCTCTTCCCTTGTATCCTTGGCCATGAAGCTGCAGGGGTTGTGGAAAGTGTTGGAGAAGGTGTTACTGAGGTTCAGCCAGGGGATCATGTGATTCCCTGTTACCAGGCTGAGTGTAGGGAATGCAAGTTTTGCAAGTCTGGGAAGACTAACCTGTGTGGCAAGGTTCGCTCTGCCACTGGAGTTGGGGTCATGCTTGAGGATCGTAAGAGCCGGTTCTCTATTAATGGGAAGCCCATCTACCATTTCATGGGAACTTCCACGTTTAGTCAGTACACTGTTGTTCATGATGTTAGCGTGGCTAAGATTGATCCTAAGGCTCCTCTGGAGAAGGTTTGTCTTCTCGGATGTGGGGTTCCAACTGGCCTCGGTGCTGTCTGGAACACTGCAAAAGTGGAACCAGGGTCAACTGTTGCAATTTTTGGCCTAGGAACTGTTGGCCTTGCTGTTGCAGAGGGTGCAAAAACTGCTGGAGCATCCCGGGTTATTGGTGTAGATATTGACAGTAATAAGTTTCAAATAGCAAAGGACTTTGGAGTCACAGAGTTTGTTAACCCAAAAGATCACGAGAAACCGATTCAGCAGGTCATAGCTGATCTCACCGATGGTGGGGTTGATTATAGCTTTGAGTGCATTGGGAATGTCTCCGTGATGAGATCTGCCTTGGAATGTACCCACAAGGGCTGGGGGACATCAGTTGTTGTGGGCGTTGCAGCATCAGGGCAGGAAATATCAACTCGCCCTTTCCAGTTGGTAACTGGGCGTGTCTGGAAAGGAACCGCATTTGGTGCCTTCAAGAGCAGGTCACAAGTGCCTTGGCTTGTTGAAAAGTACTTGAAGAAGGAAATCAAGGTTGATGAGTACATAACACATAATATGACTCTTGAGGAGATCAACCAGGCTTTTGATCTTATGCATGAAGGGAAATGTCTCCGAGTTGTGCTTGCAATGCATGGATAA 1143 0.4899 MATTQGQVITCKAAVAWEPNKPLTIEDVQVAPPQAGEVRVKILYTALCHTDAYTWSGKDPEGLFPCILGHEAAGVVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRSATGVGVMLEDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPKAPLEKVCLLGCGVPTGLGAVWNTAKVEPGSTVAIFGLGTVGLAVAEGAKTAGASRVIGVDIDSNKFQIAKDFGVTEFVNPKDHEKPIQQVIADLTDGGVDYSFECIGNVSVMRSALECTHKGWGTSVVVGVAASGQEISTRPFQLVTGRVWKGTAFGAFKSRSQVPWLVEKYLKKEIKVDEYITHNMTLEEINQAFDLMHEGKCLRVVLAMHG* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0970 380 Pfam Zinc-binding dehydrogenase 207 328 IPR013149 -
Lja1g0970 380 Gene3D - 14 373 - -
Lja1g0970 380 CDD alcohol_DH_class_III 9 376 IPR014183 GO:0006069|GO:0008270|GO:0051903
Lja1g0970 380 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 69 83 IPR002328 GO:0008270|GO:0016491
Lja1g0970 380 Pfam Alcohol dehydrogenase GroES-like domain 36 163 IPR013154 -
Lja1g0970 380 SUPERFAMILY GroES-like 4 194 IPR011032 -
Lja1g0970 380 PANTHER ALCOHOL DEHYDROGENASE 4 377 - -
Lja1g0970 380 PANTHER S-(HYDROXYMETHYL)GLUTATHIONE DEHYDROGENASE 4 377 - -
Lja1g0970 380 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 169 342 IPR036291 -
Lja1g0970 380 SUPERFAMILY GroES-like 327 376 IPR011032 -
Lja1g0970 380 TIGRFAM adh_III_F_hyde: S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase 11 378 IPR014183 GO:0006069|GO:0008270|GO:0051903
Lja1g0970 380 Gene3D - 183 321 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0970 Lja-Chr1 9612835 9616212 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0970 1 332 Monolignol Biosynthesis Gene Families AT1G72680 25.816 3.07e-16 77.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0970 K00121 - bvg:104899321 703.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0970 1 9612835 9616212 Lja1g0970 1 9612835 9616212 ECH
Lja1g0970 1 9612835 9616212 Lja5g2101 5 28627171 28630848 PCT