Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0963 ATGGAGAACTTTTTTCGCCTAGTTGATCATGAGGATTTATTCTCACGCCGTTGCATTTGGGTCAATGGCCCTGTGATTGTAGGTGCAGGCCCTTCAGGGCTAGCCACAGCAGCATGCCTTAGAGAACAAGGGGTACCCTTCATGGTTCTCGAAAGAGCAGATTGCATAGCTTCTCTCTGGCAAAGACGCACCTATGACAGGCTAAAGCTTCATCTCCCAAAGCAATTCTGCCAACTCCCTATGCTTCCATTCCCTGAAGAATTCCCTGAATATCCAACAAAGAAACAGTTCATTGAATATCTTGAATCATACGCAAAGAAATTTGAGATCAATCCTCAGTTCAATTCCCCTGTTCAGTCTGCGAGGTACGAAGAGACCAGTGGCCTGTGGAGGGTGAAGACCGCCGAGGTTGAGTACATTTGCCGGTGGCTCGTGGTGGCTACCGGCGAAAACGCTGAATGTGTGATGCCGGAGATCGAAGGCCTTGGTGAATTCAAAGGAGATGTTATGCATGCTGCTGAGTACAAGTCAGGGGAAAGCTTCAGGGGAAAGAAAGTTCTTGTTGTGGGGTGTGGAAACTCCGGCATGGAGGTTTCTCTTGACCTCGCAAACCACCATGCTTCACCTTCCATGGTTGTTCGTAGCTCGGTTCATGTTTTACCAAGAGAAATCTTTGGGAAATCAACGTTTGAGTTGGCGGTTATGATGCTGCAATGGCTACCCCTTTGGCTTGTAGACAAGCTTCTGTTGATTCTAACATGGTTTGTTCTGGGTAACACAAATAGATTGGGGCTGAAAAGGCCATCACAAGGTCCATTGGAGCTGAAGAACACAATGGGAAAAACCCCTGTTTTAGACATTGGTGCCTTAGAGAAAATCAGATCCGGTGACATCAACGTTGTGCCAGGAATCAAGAGGTTTAATAAACATGAGGTTGAGCTTGTTAATGGTGAAAAGCTTGACATTGATGCAGTTGTTCTTGCAACTGGTTACCGCAGCAATGTCCCTTCTTGGCTTCAGGAAGGTGAATTCTTCTCCAAGAATGGATACCCAAAGATGCCATTTCCTCATGGTTGGAAAGGGAAAGCTGGTCTTTATGCTGTGGGGTTCACAAAGAGAGGGCTCTCTGGTGCTTCATCTGATGCTATGAAAATATCTCAAGATATTGGTCAAGTTTGGAAAGAAGAGACCAAACAAAAGAAACAGAACAACAATAGAGCTTACCATAGACGTTGCATTTCACAGTTCTAA 1251 0.4564 MENFFRLVDHEDLFSRRCIWVNGPVIVGAGPSGLATAACLREQGVPFMVLERADCIASLWQRRTYDRLKLHLPKQFCQLPMLPFPEEFPEYPTKKQFIEYLESYAKKFEINPQFNSPVQSARYEETSGLWRVKTAEVEYICRWLVVATGENAECVMPEIEGLGEFKGDVMHAAEYKSGESFRGKKVLVVGCGNSGMEVSLDLANHHASPSMVVRSSVHVLPREIFGKSTFELAVMMLQWLPLWLVDKLLLILTWFVLGNTNRLGLKRPSQGPLELKNTMGKTPVLDIGALEKIRSGDINVVPGIKRFNKHEVELVNGEKLDIDAVVLATGYRSNVPSWLQEGEFFSKNGYPKMPFPHGWKGKAGLYAVGFTKRGLSGASSDAMKISQDIGQVWKEETKQKKQNNNRAYHRRCISQF* 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0963 416 PANTHER FLAVIN-BINDING MONOOXYGENASE-LIKE PROTEIN (AFU_ORTHOLOGUE AFUA_4G09220) 10 414 - -
Lja1g0963 416 SUPERFAMILY FAD/NAD(P)-binding domain 183 369 IPR036188 -
Lja1g0963 416 Pfam Flavin-binding monooxygenase-like 26 336 IPR020946 GO:0004499|GO:0050660|GO:0050661
Lja1g0963 416 SUPERFAMILY FAD/NAD(P)-binding domain 25 221 IPR036188 -
Lja1g0963 416 PRINTS FAD-dependent pyridine nucleotide reductase signature 24 43 - -
Lja1g0963 416 PRINTS FAD-dependent pyridine nucleotide reductase signature 185 203 - -
Lja1g0963 416 Gene3D - 23 401 IPR036188 -
Lja1g0963 416 PRINTS Pyridine nucleotide disulphide reductase class-II signature 23 45 - -
Lja1g0963 416 PRINTS Pyridine nucleotide disulphide reductase class-II signature 181 205 - -
Lja1g0963 416 PRINTS Pyridine nucleotide disulphide reductase class-II signature 142 150 - -
Lja1g0963 416 PANTHER INDOLE-3-PYRUVATE MONOOXYGENASE YUCCA3-RELATED 10 414 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0963 Lja-Chr1 9523792 9525731 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0963 1 9523792 9525731 Lja1g0963 1 9523792 9525731 ECH
Lja1g0963 1 9523792 9525731 Lja6g0117 6 2021840 2024037 PCT
Lja5g1524 5 16070605 16078963 Lja1g0963 1 9523792 9525731 PCT