Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0953 ATGGATGCTCGTCAATTAACCGCACTTGTTGTTGATGATGACATCATTGTCCGAATGATATATGGAAAGATGTTGAACAGAGTTGGTGTGAAAAATCAAGTCGTGGAGAATGGGAAAGAAGCTATAGACATTCACTGCTCTGGTCAAAGCTTTGACCTTATTTTCATGGACAAGGACATGCCTGTTATGAATGGCATTGAGGCAACAAAGGAACTTCGATCAATGGGGGTTGATAGCATGATCGTTGGTGTAACAGCACACTCTGTTGATGATGCCCGTGGCCAAGAATTCAAGAAAGCAGGACTAGATGACTGCTTGGAAAAGCCCTTGACCATGGCCAAGCTTACTTCGATCATTCACAAGATCAACAACAAGAATTTCACTAATGTTTGA 393 0.4198 MDARQLTALVVDDDIIVRMIYGKMLNRVGVKNQVVENGKEAIDIHCSGQSFDLIFMDKDMPVMNGIEATKELRSMGVDSMIVGVTAHSVDDARGQEFKKAGLDDCLEKPLTMAKLTSIIHKINNKNFTNV* 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0953 130 PANTHER TWO-COMPONENT RESPONSE REGULATOR 24 3 126 - -
Lja1g0953 130 CDD REC_hyHK_CKI1_RcsC-like 9 119 - -
Lja1g0953 130 Pfam Response regulator receiver domain 9 119 IPR001789 GO:0000160
Lja1g0953 130 SMART REC_2 6 119 IPR001789 GO:0000160
Lja1g0953 130 Gene3D - 1 129 - -
Lja1g0953 130 ProSiteProfiles Response regulatory domain profile. 7 123 IPR001789 GO:0000160
Lja1g0953 130 PANTHER TWO-COMPONENT RESPONSE REGULATOR 3 126 - -
Lja1g0953 130 SUPERFAMILY CheY-like 5 123 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0953 Lja-Chr1 9410871 9411603 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0953 6 119 Response Regulator Gene Family AT3G04280 45.217 3.78e-29 101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lja1g0953 Response_reg 1.1e-22 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0953 - - pop:7456412 152.525