Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0952 ATGAACCACCACTGCGTTCCAGATTTCGATTTCCAAATCGATGACCAGGATTACCCTTCATCACTACCCATGTCCATGCCTTCACCAGCTAAGAAACCATCCATTGCAGACGACGATATCATGGAGCTGCTATGGCAAAATGGTCAGGTCGTGATGCAGAGTCAGAATCAGCGTCCTCTCAGGAAACCACCGCCGGCAGCGGCGGTGAGAAGCAACAACGACTATGCTCCTCCTGTTGCTGGTCCTTCCACTGCGAAGGAGATTCGTCCGGAGGTGGAAAATTACAACCAGCATCTCTTCATGCAAGAAGGAGAAATGGCTTCGTGGCTTCACTATCCAATCGACGACGGTGATGATCCGCATCCGCCTTTGGATCAGAGCTTCTGCGCCGATTTCCTCTATCCGCCGCCGTCGGATGTTAACGACAACGACAACAGTGCCATGCAAGCACCTGCTCTCACGTCTCGACTCACGGATCTCCGGAAGCCACCGATTTCGGCGCTGGCTTCTCCTCGACCTCCGATTCCGCCGCCGAGGAGGACGGAACTGGCGCCGCCGCAGAGGATTGCGGAACAGGCACCGCCGCCGAAGACGACACAGAACTTTGCCTGTTTGTGGAAGCATAATGCGAGAGCGGAGCCAGGACCGTCGTCGATTTCGAGAACCGCGGCGAGGGAATCGACGGTGGTAGATTCGTGCGATACACCTGCCGCGCCGGCGATGGCTCCGCCGTCTATGATTTCAGAGACGGTGAGAAGCTCGGCGGGAGGAGCGAGCGGTTTAGCGGCGCCATCGACTACTTTTGATGAACCGGGCGGTTCGAGTAGCAGCGGAGAGCCGGTTCAGAAGGTGGCGGCGCAGGAGCGGAAGCGGAAAGGAAGGGAAGCGGAGGAATGGGAGTGTCAGAGCGAGGATGTTGATTTTGAATCTGCGGAAGGGAAAAAACAAGTCCGTGGGTCTTCATCTACAAAGAGATCTCGTGCTGCCGAGGTCCATAATCTCTCAGAAAGGAGGCGTCGTGATCGGATTAATGAAAAGATGAAAGCTTTGCAAGAACTTATACCTCGTTGTAATAAGTCTGACAAAGCTTCAATGCTGGATGAAGCAATTGAATACTTGAAGTCGCTGCAGTTACAAGTGCAGATGATGTCCATGGGATGTGGCATGGTACCTATAATGTTTCCTGGAATCCAGCAGTATATGCCTGCAATGGGAATGGGGATTGGAATGGGTATGGGTATGGACATGGGAATGACCAGACCAATGATGCCATTTCCCAATATGTTTCCTGGTTCAACATTGCCAGCAGCAACTGCAGCTGCTCATTTGGGACCAAGGTTTGGTATGCCTCCTTTCCACATGCCACATATTCCTGCACCTGATTCATCTAGAATGCAAGCGGCATCTCTATCGGATAACAATATGCTCAACTCCGTTGGTGCACCTGATCTAAATCAGTCACGGATTCCAAACTTCACTGATCCTTATCAACAATACCTTGGTCCCCACCAGATGCAGTTTCAATTGATGCAGAATCACGCAACGAATCAACCAAGTGCAAGCAACCCAAGTAATAGTAGGGGCCATGAGAATCAAGAAAAGCCCTAG 1608 0.5199 MNHHCVPDFDFQIDDQDYPSSLPMSMPSPAKKPSIADDDIMELLWQNGQVVMQSQNQRPLRKPPPAAAVRSNNDYAPPVAGPSTAKEIRPEVENYNQHLFMQEGEMASWLHYPIDDGDDPHPPLDQSFCADFLYPPPSDVNDNDNSAMQAPALTSRLTDLRKPPISALASPRPPIPPPRRTELAPPQRIAEQAPPPKTTQNFACLWKHNARAEPGPSSISRTAARESTVVDSCDTPAAPAMAPPSMISETVRSSAGGASGLAAPSTTFDEPGGSSSSGEPVQKVAAQERKRKGREAEEWECQSEDVDFESAEGKKQVRGSSSTKRSRAAEVHNLSERRRRDRINEKMKALQELIPRCNKSDKASMLDEAIEYLKSLQLQVQMMSMGCGMVPIMFPGIQQYMPAMGMGIGMGMGMDMGMTRPMMPFPNMFPGSTLPAATAAAHLGPRFGMPPFHMPHIPAPDSSRMQAASLSDNNMLNSVGAPDLNQSRIPNFTDPYQQYLGPHQMQFQLMQNHATNQPSASNPSNSRGHENQEKP* 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0952 535 Gene3D - 322 385 IPR036638 GO:0046983
Lja1g0952 535 MobiDBLite consensus disorder prediction 511 535 - -
Lja1g0952 535 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 3 533 IPR031066 -
Lja1g0952 535 MobiDBLite consensus disorder prediction 211 341 - -
Lja1g0952 535 MobiDBLite consensus disorder prediction 511 528 - -
Lja1g0952 535 MobiDBLite consensus disorder prediction 284 299 - -
Lja1g0952 535 MobiDBLite consensus disorder prediction 167 183 - -
Lja1g0952 535 MobiDBLite consensus disorder prediction 247 261 - -
Lja1g0952 535 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 325 391 IPR036638 GO:0046983
Lja1g0952 535 Coils Coil 333 353 - -
Lja1g0952 535 SMART finulus 333 382 IPR011598 GO:0046983
Lja1g0952 535 MobiDBLite consensus disorder prediction 268 282 - -
Lja1g0952 535 MobiDBLite consensus disorder prediction 1 32 - -
Lja1g0952 535 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 3 533 - -
Lja1g0952 535 MobiDBLite consensus disorder prediction 155 199 - -
Lja1g0952 535 MobiDBLite consensus disorder prediction 53 84 - -
Lja1g0952 535 CDD bHLH_AtPIF_like 327 390 - -
Lja1g0952 535 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 327 376 IPR011598 GO:0046983
Lja1g0952 535 Pfam Helix-loop-helix DNA-binding domain 331 377 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0952 Lja-Chr1 9393660 9402624 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0952 3 382 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G20180 40.302 3.48e-66 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lja1g0952 HLH 6.6e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0952 - - gmx:100797225 642.499
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0952 1 9393660 9402624 Lja1g0952 1 9393660 9402624 ECH