Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0945 ATGGCCGGTAAAGGAGAAGGTCCAGCGATCGGTATCGATCTCGGAACCACCTACTCTTGCGTCGGTGTCTGGCAACATGACCGTGTTGAAATCATCGCCAACGACCAAGGTAACAGGACCACCCCGTCCTACGTCGCCTTCACTGACACCGAACGTCTCATCGGTGATGCCGCCAAGAACCAGGTCGCCATGAACCCCATCAACACCGTCTTCGATGCGAAGAGGTTGATTGGTAGAAGATTCAGTGATGCCTCTGTTCAGAGTGATGTGAAATTGTGGCCATTTAAGCTCATTCCTGGACCTGCTGATAAGCCGATGATTGTGGTTGACTACAAGGGTGAGGAGAAGCAGTTTGCTGCGGAAGAGATCTCTTCTATGGTGCTTACCAAGATGCGTGAGATTGCCGAGGCTTACCTTGGTGTTACTATTAAGAATGCTGTTGTTACTGTGCCTGCTTACTTCAATGACTCTCAGCGTCAAGCGACCAAGGATGCTGGTGTTATTGCTGGTCTTAATGTCATGAGAATTATCAATGAGCCTACTGCTGCTGCCATTGCTTATGGTCTTGACAAGAAGGCAACCAGCGTTGGTGAGAAGAATGTCTTGATCTTTGATCTTGGAGGTGGTACCTTTGATGTTTCTTTGCTGACTATTGAAGAAGGTATTTTTGAGGTGAAAGCAACAGCTGGAGACACTCATCTTGGTGGTGAGGATTTTGACAACAGGATGGTGAACCACTTTGTTCAGGAGTTCAAGAGAAAGAACAAGAAGGACATCAGCGGTAACCCCAGAGCACTCAGGAGGTTGAGGACAGCCTGTGAGAGGGCGAAGAGAACTCTGTCATCTACTGCCCAGACCACAATTGAAATTGACTCTTTGTATGAGGGAATTGATTTCTACTCCCCCATTACTCGTGCCAGATTTGAGGAGATGAATATGGATCTCTTCAGGAAATGTATGGAGCCTGTTGAGAAGTGTTTGAGAGATGCAAAGATGGACAAGAGGAGTGTCCATGATGTAGTCCTTGTTGGTGGTTCTACAAGAATTCCAAAGGTTCAACAACTTCTGCAAGATTTCTTCAATGGAAAGGAGCTGTGCAAGAGCATTAATCCTGATGAGGCTGTTGCTTATGGCGCTGCTGTTCAGGCTGCAATCTTGAGTGGTGAGGGTAATGAGAAGGTTCAAGATCTTCTCCTTCTCGATGTTACCCCTCTCTCACTTGGTTTGGAGACTGCTGGTGGTGTCATGACTGTCTTGATCCCTAGGAACACTACAATTCCAACTAAGAAGGAACAGGTCTTCTCAACATATTCTGACAACCAGCCTGGTGTTTTGATCCAGGTCTTCGAAGGTGAGAGAACAAGGACTAGAGATAACAATTTGTTGGGAAAATTTGAACTTTCAGGCATTCCTCCTGCTCCCAGAGGTGTTCCCCAGATTACAGTGTGCTTTGACATTGATGCCAATGGTATCTTGAATGTCTCTGCTGAAGACAAGACCACCGGCCAAAAGAACAAGATCACCATCACCAATGACAAGGGTAGACTATCCAAGGACGACATTGAGAAGATGGTTCAAGAGGCTGAGAAGTACAAATCTGAGGATGAGGAACACAAGAAGAAGGTCGAGGCCAAGAACGCCTTGGAGAACTATGCATACAACATGAGGAACACCGTGAAGGATGAGAAGATTGCAGGAAAGCTTGATTCAGCTGACAAGACAAAGATCGAGGATGCAATTGAGCAGGCCATCCAGTGGCTAGAAAGCAACCAGCTTGCAGAGGCAGATGAATTTGAGGACAAGATGAAGGAATTGGAAAGCATCTGCAACCCAATCATCGCAAAGATGTACCAGGGTGGTGCTGGTGGTCCTGATGTGGGTGGTGCAGCTGAGGAAGAGTATGCTCCTAGTGGTGGAAGTGGTGCTGGCCCCAAGATTGAGGAAGTCGACTAA 1953 0.4711 MAGKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPINTVFDAKRLIGRRFSDASVQSDVKLWPFKLIPGPADKPMIVVDYKGEEKQFAAEEISSMVLTKMREIAEAYLGVTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSPITRARFEEMNMDLFRKCMEPVEKCLRDAKMDKRSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVFEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKDDIEKMVQEAEKYKSEDEEHKKKVEAKNALENYAYNMRNTVKDEKIAGKLDSADKTKIEDAIEQAIQWLESNQLAEADEFEDKMKELESICNPIIAKMYQGGAGGPDVGGAAEEEYAPSGGSGAGPKIEEVD* 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0945 650 ProSitePatterns Heat shock hsp70 proteins family signature 2. 203 216 IPR018181 -
Lja1g0945 650 Coils Coil 588 608 - -
Lja1g0945 650 Gene3D Actin; Chain A, domain 4 235 318 - -
Lja1g0945 650 ProSitePatterns Heat shock hsp70 proteins family signature 1. 12 19 IPR018181 -
Lja1g0945 650 PRINTS 70kDa heat shock protein signature 8 21 - -
Lja1g0945 650 PRINTS 70kDa heat shock protein signature 337 353 - -
Lja1g0945 650 PRINTS 70kDa heat shock protein signature 396 415 - -
Lja1g0945 650 PRINTS 70kDa heat shock protein signature 477 493 - -
Lja1g0945 650 PRINTS 70kDa heat shock protein signature 36 48 - -
Lja1g0945 650 PRINTS 70kDa heat shock protein signature 58 66 - -
Lja1g0945 650 PRINTS 70kDa heat shock protein signature 146 166 - -
Lja1g0945 650 PRINTS 70kDa heat shock protein signature 209 219 - -
Lja1g0945 650 PRINTS 70kDa heat shock protein signature 369 389 - -
Lja1g0945 650 Gene3D - 546 619 IPR029048 -
Lja1g0945 650 PANTHER HEAT SHOCK PROTEIN 70KDA 1 628 IPR013126 GO:0005524|GO:0140662
Lja1g0945 650 ProSitePatterns Heat shock hsp70 proteins family signature 3. 340 354 IPR018181 -
Lja1g0945 650 Gene3D - 192 366 - -
Lja1g0945 650 Coils Coil 521 541 - -
Lja1g0945 650 SUPERFAMILY Actin-like ATPase domain 8 191 IPR043129 -
Lja1g0945 650 Pfam Hsp70 protein 9 618 IPR013126 GO:0005524|GO:0140662
Lja1g0945 650 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 391 545 IPR029047 -
Lja1g0945 650 Gene3D - 71 126 - -
Lja1g0945 650 Gene3D - 10 384 - -
Lja1g0945 650 SUPERFAMILY Actin-like ATPase domain 198 388 IPR043129 -
Lja1g0945 650 MobiDBLite consensus disorder prediction 620 650 - -
Lja1g0945 650 PANTHER SHOCK PROTEIN, PUTATIVE-RELATED 1 628 - -
Lja1g0945 650 CDD HSPA1-2_6-8-like_NBD 9 387 - -
Lja1g0945 650 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 543 624 IPR029048 -
Lja1g0945 650 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 392 549 IPR029047 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0945 Lja-Chr1 9355945 9359806 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0945 1 650 Calmodulin-binding Proteins AT3G09440 91.231 0.0 1212
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0945 K03283 - gmx:100798307 1209.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0945 1 9355945 9359806 Lja1g2568 1 29958577 29961242 ECH
Lja1g0945 1 9355945 9359806 Lja1g0945 1 9355945 9359806 ECH
Lja1g0945 1 9355945 9359806 Lja3g0727 3 7359592 7362336 ECH