Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0941 ATGGCGGCGTCACGGCGGCTCCGGGATCTCCAATCCGAGCCCTCCAACAAGATCTGCGTCGACTGCTCCCAAAAAAACCCCCAATGGGCCTCCGTCTCCTACGGCGTCTTCATGTGCCTCGAATGCTCCGGCAAACACCGCGGCCTCGGTGTCCACATCTCCTTCGTCCGATCCGTCACCATGGACTCCTGGTCCGAACTCCAGATCAAGAAAATGGAAGCCGGAGGCAACAAAAAACTCAACAACTTCCTCTCCCAATACGGCATCGCCAAGGAAACCGACATCGTCGCCAAGTACAATTCCAATGCCGCTTCCATCTACCGCGACCGCATCCAGGCGATCGCCGAGGGCCGTTCCTGGCGGGATCCACCGGTTGTGAAGGAGTCAGGGAGGCCGCCGGTGGCTCCTAGCAGCGGGGGCGGCGGAGGGTGGGATGATTGGGGTAATGAGGACAATGTCGGATCTCGCGGCGGTGGGGATATGCGGCGGAATCAGTCTACTGGAGATGTTTTGGGGTTTGGTGGTGGAGGCGGAGTGGTTCCGTCGAGGTCGAAGTCGACGGAGGATATTCACACGCGGACGCAGTTGGAGGCATCTGCTGCTAACAAGGAGAGCTTCTTCGCGAGGAAGATGGCGGAGAATGAGTCTAGGCCGGATGGGCTTCCGCCGTCGCAGGGTGGCAAGTATGTTGGATTTGGGTCTAGTCCTGCCCCTGCTCAAAGGAGCAGCAATCCTCAAAACGATTATTTCGATGTCGTTTCGCAGGGAATTGGTAAATTATCATTAGTTGTTCAGGCAGGAACCAAAGAGTTAACTTCCAAGGTAAAGGAGGGTGGTTATGATTACAAAGTCAATGAAACTGTCAATATTGTCTCTCAGAAGACATCGGAGATTGGACAAAGGACATGGGGTATAATGAAAGGGGTCATGGCATTGGCTTCACAGAAAGTTGAGGAGCTCACTAGTGATAACCCAAATGGGAATTCTGATAACTGGCAACGAAATGAGAATGGTAGAAATGGTTCTTATCAAGAGTTCAATCATGAGAATAAAGGTTGGAATTCTTCTATCAGAGAAGGACAGCCTTCATCAGGTGGACAAACTAATACTTACTCAAGTTCTTGGGATGATTGGGACCATAAAGATTCCACAAAGGGAGGTCCAGCTAGAGGATCAGCTCCTCAGTCATCCAATGGGAGGAACAACTCAAGTTCTTGGGATGATTGGGACCACAAGGATGCTAGGAAGGTAGAACCAGCTAAAGGATCATCTCCCCATAATAATGATAGTTGGGCTGGCTGGGATGATGCCAAAGATGATGACTTCGATAATAAAGCTAGTGATCATAATGGAACATCAGGTTCTGGCTGGACAGGAGGAGGCTTTCTCTAA 1392 0.5129 MAASRRLRDLQSEPSNKICVDCSQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSELQIKKMEAGGNKKLNNFLSQYGIAKETDIVAKYNSNAASIYRDRIQAIAEGRSWRDPPVVKESGRPPVAPSSGGGGGWDDWGNEDNVGSRGGGDMRRNQSTGDVLGFGGGGGVVPSRSKSTEDIHTRTQLEASAANKESFFARKMAENESRPDGLPPSQGGKYVGFGSSPAPAQRSSNPQNDYFDVVSQGIGKLSLVVQAGTKELTSKVKEGGYDYKVNETVNIVSQKTSEIGQRTWGIMKGVMALASQKVEELTSDNPNGNSDNWQRNENGRNGSYQEFNHENKGWNSSIREGQPSSGGQTNTYSSSWDDWDHKDSTKGGPARGSAPQSSNGRNNSSSWDDWDHKDARKVEPAKGSSPHNNDSWAGWDDAKDDDFDNKASDHNGTSGSGWTGGGFL* 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0941 463 MobiDBLite consensus disorder prediction 432 447 - -
Lja1g0941 463 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 1 398 IPR044519 GO:0005096|GO:0016192
Lja1g0941 463 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 396 463 IPR044519 GO:0005096|GO:0016192
Lja1g0941 463 CDD ArfGap_ArfGap1 3 117 - -
Lja1g0941 463 SUPERFAMILY ArfGap/RecO-like zinc finger 5 112 IPR037278 -
Lja1g0941 463 MobiDBLite consensus disorder prediction 320 374 - -
Lja1g0941 463 MobiDBLite consensus disorder prediction 320 463 - -
Lja1g0941 463 SMART arf_gap_3 1 120 IPR001164 GO:0005096
Lja1g0941 463 Pfam Putative GTPase activating protein for Arf 5 99 IPR001164 GO:0005096
Lja1g0941 463 PRINTS HIV Rev interacting protein signature 35 52 IPR001164 GO:0005096
Lja1g0941 463 PRINTS HIV Rev interacting protein signature 16 35 IPR001164 GO:0005096
Lja1g0941 463 PRINTS HIV Rev interacting protein signature 56 77 IPR001164 GO:0005096
Lja1g0941 463 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 1 398 - -
Lja1g0941 463 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 396 463 - -
Lja1g0941 463 MobiDBLite consensus disorder prediction 389 404 - -
Lja1g0941 463 ProSiteProfiles ARF GTPase-activating proteins domain profile. 4 120 IPR001164 GO:0005096
Lja1g0941 463 MobiDBLite consensus disorder prediction 405 422 - -
Lja1g0941 463 MobiDBLite consensus disorder prediction 122 247 - -
Lja1g0941 463 Gene3D Arf GTPase activating protein 1 127 IPR038508 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0941 Lja-Chr1 9246659 9250926 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0941 5 87 C2H2 Transcription Factor Family AT4G05330 48.810 1.51e-22 96.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0941 K12492 - gmx:100801306 645.966
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0941 1 9246659 9250926 Lja1g0941 1 9246659 9250926 ECH
Lja1g0941 1 9246659 9250926 Lja5g2768 5 54774462 54778401 PCT