Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0933 ATGGCTTTCTTCTCTGGAGTTCAACGCTTTCTTCGTCAGTCCTCACATAACCTCACTTCGGTTCGTCTCTGTTCAACAACTCTCACTACCCCCAAACTTTTCATCAGCGGTCTTTCAAGACAGACGACCGATCGAAAACTTAATGAAGCATTTGCTCCTTTTGGACAGCTGATCGAAGCTAAGGTGATAACTGATAGAGCCTCTGGAAGATCCAAAGGTTTCGGTTTTGTATCTTACGCGAGCATAGAAGAAGCTGAAAAGGCAAGAAAAGGAATGAATGCTAAGTTTTTGGATGGATGGGTTATATTTGTTGATCCTGCCAAACCAAGAGAGCCTAGACCTCCTATGCAGTCAGAGTCGCAGCAGCCCTCTGAAACTGGTTTCACAGTTAACAAGACGGTTGGTTGGTGTGGTTGA 417 0.4484 MAFFSGVQRFLRQSSHNLTSVRLCSTTLTTPKLFISGLSRQTTDRKLNEAFAPFGQLIEAKVITDRASGRSKGFGFVSYASIEEAEKARKGMNAKFLDGWVIFVDPAKPREPRPPMQSESQQPSETGFTVNKTVGWCG* 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0933 138 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 33 99 IPR000504 GO:0003723
Lja1g0933 138 SMART rrm1_1 32 105 IPR000504 GO:0003723
Lja1g0933 138 MobiDBLite consensus disorder prediction 108 130 - -
Lja1g0933 138 PANTHER NUCLEOLAR PROTEIN 8 1 138 - -
Lja1g0933 138 Gene3D - 11 125 IPR012677 -
Lja1g0933 138 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 1 138 - -
Lja1g0933 138 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 31 109 IPR000504 GO:0003723
Lja1g0933 138 SUPERFAMILY RNA-binding domain, RBD 31 121 IPR035979 GO:0003676
Lja1g0933 138 MobiDBLite consensus disorder prediction 115 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0933 Lja-Chr1 9181248 9183374 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0933 33 116 Eukaryotic Initiation Factors Gene Family AT3G16380 30.952 1.19e-08 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0933 - - lang:109334292 212.231
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0933 1 9181248 9183374 Lja1g0933 1 9181248 9183374 ECH