Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0922 ATGAAGAGACAGAGAGACAATGAAGGAACAGAGAGTTTCGATTTAACAAACTGTCTTATGTTAATGCTGTCTTGTCCAAAACAGAAAAGAACCATTAATGAGAGTGTTGAATTTGAGTGCAAAACCTGCAACCGCAAGTTCTCATCATTTCAAGCTCTGGGTGGCCACAGGGCTAGCCACAACCACAAGAGAGTGAAGCTGGAAGAACAGGCCAAGACTCCGAGTTTGTGGGACAACAACAAACCCAGAATGCACGTGTGCTCTGTTTGTGGGTTGGGGTTCTCTCTGGGACAGGCTCTTGGAGGCCACATGAGAAAACACAGAAACAATGAAGGGTTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTATTCAATCAAGGAAGAAGTTGCAAAATTTCCAGTTTTGAAAAGATTGAATAGTAGTAAGAGGGTCTTGTGCTTGGACTTGGATTTGAACTTCCCCCCTATGGAGAATGACTTCATGTTTGGGATGAAATCACCAAGCCCTGTTCCACTTTCTCTGTTCTGA 528 0.4299 MKRQRDNEGTESFDLTNCLMLMLSCPKQKRTINESVEFECKTCNRKFSSFQALGGHRASHNHKRVKLEEQAKTPSLWDNNKPRMHVCSVCGLGFSLGQALGGHMRKHRNNEGFSSSSSSSSSYSIKEEVAKFPVLKRLNSSKRVLCLDLDLNFPPMENDFMFGMKSPSPVPLSLF* 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0922 175 Gene3D Classic Zinc Finger 35 107 - -
Lja1g0922 175 ProSiteProfiles Zinc finger C2H2 type domain profile. 38 65 IPR013087 -
Lja1g0922 175 ProSiteProfiles Zinc finger C2H2 type domain profile. 85 112 IPR013087 -
Lja1g0922 175 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 1 167 - -
Lja1g0922 175 SUPERFAMILY beta-beta-alpha zinc fingers 38 107 IPR036236 -
Lja1g0922 175 PANTHER ZINC FINGER PROTEIN ZAT5 1 167 - -
Lja1g0922 175 ProSitePatterns Zinc finger C2H2 type domain signature. 40 62 IPR013087 -
Lja1g0922 175 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 25 - -
Lja1g0922 175 ProSitePatterns Zinc finger C2H2 type domain signature. 87 107 IPR013087 -
Lja1g0922 175 SMART c2h2final6 85 107 IPR013087 -
Lja1g0922 175 SMART c2h2final6 38 60 IPR013087 -
Lja1g0922 175 Pfam C2H2-type zinc finger 85 108 - -
Lja1g0922 175 Pfam C2H2-type zinc finger 38 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0922 Lja-Chr1 9084707 9085703 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0922 1 163 C2H2 Transcription Factor Family AT2G37430 43.103 6.98e-37 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lja1g0922 zf-C2H2_6 2.6e-08 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0922 - - ccaj:109797444 178.718
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0922 1 9084707 9085703 Lja5g2746 5 54421940 54422734 PCT