Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0908 ATGGGGAAAGGGGGCCAGGATTATGGGAGAAAGGAGAATCCGATTCCCGATGCTTCGGATCGAGAAACCTACAAGGCGTGGGCCAAGGAAGTGCGGGAATGCGAGGAGCACTTCAAGGTCAAGGTGAAATCAGGGTTGAGTACCGAGGAGGTTGAGAATCGGCGCAAGATCCATGGATTCAACGAGTTGGAGAAGCACGAGGGGCAATCTATTTGGAGTTTGATTCTGGATCAGTTTAATGATACTCTCGTTCGGATTCTGCTTGGTGCGGCGATTATCTCGTTTGTTCTCGCGTGGTATGATGGCGACGAAGGCGGCGAGATGGAGATTACGGCTTTCGTGGAGCCGTTGGTGATTTTCCTGATTTTGATTGTGAATGCTATTGTTGGGGTTTGGCAGGAGAGTAATGCAGAGAAGGCGCTCGAGGCTTTGAAGGAGATTCAATCGGAGCAGGCCTCGGTGATTCGAGATGGGGTGAAGGTTCTGAGCATTCCGGCCAAGGATCTTGTTCCGGGCGATGTTGTGGAGCTTAAGGTTGGGGATAAGGTGCCTGCGGATATGCGTGTGGTGGAGTTGATTAGCTCGACGTTGCGGTTGGAGCAGGGGTCCTTGACTGGGGAGAGTGAAGCTGTGAATAAAACTAACAAGCCTGTGGCCGCGGATTCCGATATTCAAGGGAAGAGGTGTATGGTTTTCGCGGGGACGACTGTTGTTAACGGGAATTGCATCTGCTTGGTGACTCAGACTGGCATGGGTACTGAGATTGGGAAGGTGCATATGCAGATACACGAGGCGTCGCAGAGTGAGGACGATACCCCCTTGAAGAAGAAGCTCAATGAGTTTGGGGAGAAGCTAACCATGATTATTGGATTGATTTGTATTTTGGTTTGGCTCATCAACGTTAAGTACTTCTTGACATGGGAGATCGTGGATGGGTGGCCGAGGAACTTCAAGTTTTCATTCGAGAAGTGCACGTATTACTTTGAGATTGCGGTGGCATTGGCTGTGGCTGCTATTCCAGAGGGTTTACCTGCAGTTATCACTACTTGCCTCGCCTTGGGGACTCGCAAGATGGCCCAGAAGAATGCCCTGGTTCGGAAGCTACCCAGCGTGGAAACTCTAGGTTGCACAACTGTGATTTGTTCTGATAAGACTGGGACATTGACCACGAACCAGATGGCTGTGTCGAAACTAGTAGCTATTGGCCCTAATGTGGACACGCTGCGAGCCTTCAAGGTGGAAGGAACTACATACAGTCCAGCTGATGGTAAAATAGATAACTGGCCAACGGGTAAATTGGATGCTAATCTTCAGACATTAGCGAAAATAGCCGCTATCTGCAATGATGCTGGAGTGTCACAGTCAGAGCATAAGTTTGTTGCCCATGGAATGCCTACTGAAGCAGCATTGAAGGTTTTGGTAGAGAAGATGGGCTTACCCAGTGATGCACGATCAGCAACCAAAAATACCTTACTACGTTGTTGTGATTGGTGGAATGAACAAGACCGGCGGATTGCTACTCTCGAGTTTGACCGTGATAGGAAGTCAATGGGTGTTATAGCGAACTCTGGTTTAGGAAAAAATTCGCTTCTGGTTAAGGGTGCTGTAGAAAATGTACTGGAAAGAAGCTCGAAAATCCAGTTGCGTGATGGTTCTATTGTTAAACTGGACAACAATGCTAGGAACCTTGTATTACAAGCTCTTCATGAAATGTCCACTAGTGCATTGCGCTGTTTGGGATTTGCGTACAAGGATGAGATCCCCAAGTTTGAAGACTACGATGGTAGTGACGATCATCCAGCCCACCAGCTTTTGCTTAATCCTTCCAACTATTCATCAATTGAAAGTGACCTTATTTTTGTTGGACTGGTTGGGTTGAGGGATCCTCCTAGGGGGGAGGTATACAATGCAATTGAAGACTGCAGAGCAGCTGGAATTCGCGTTATGGTTATAACTGGAGACAACAAGAACACTGCTGAAGCTATATGCCGTGAAATAGGTGTATTTTCACCCAATGAAGACATTAGTTCGAAAAGTTTAACTGGTAAAGATTTTATGGAGCTGCGTGATAAAAAGGCCCATCTGAAACAGGATGGTGGGCTTTTGTTTTCGAGGGCTGAACCTAAACACAAGCAAGAAATTGTGAGGCTGCTCAAAGAGGAAGGGGAGGTGGTGGCTATGACTGGGGATGGTGTTAATGATGCACCTGCCTTGAAGCTTGCAGACATTGGTATTGCAATGGGCATTGCAGGGACAGAGGTGGCCAAGGAAGCTTCTGATATGGTGTTGGCAGATGATAATTTTAGTACAATTGTTGCTGCTGTTGGTGAAGGTAGATCTATCTACAACAATATGAAGGCTTTTATCAGGTACATGATATCCTCCAATATTGGGGAGGTTGCTTCTATATTTCTAACTGCTGCACTAGGTATTCCAGAAGGGTTGATACCTGTCCAGCTTCTGTGGGTCAATCTTGTCACTGATGGACCCCCTGCAACAGCTTTAGGATTTAATCCCCCAGATAAGGATATAATGAAGAAGCCTCCTCGTCGCAGTGATGACTCACTAATTGATCTGTGGATTTTATTCCGCTATATGGTTATTGGGATCTATGTGGGATTAGCTACCGTTGGTGTCTTCATCATATGGTATACACATGGTTCCTTCTTGGGTATTGACCTTAGTGGAGATGGGCATACTCTTGTCACTTACAATCAACTTGCCAACTGGGGTCAATGCTCCTCATGGACGAACTTCACTGCTTCTCCCTTCACAGCTGGTGCTAGAGTTCTCTCTTTTGATGCTGACCCCTGTGACTACTTCCAGACTGGTAAAGTGAAAGCTATGACACTGTCCCTCTCTGTGTTGGTAGCCATTGAAATGTTCAATTCTCTCAATGCCCTGTCTGAAGATGGAAGCCTTTTGACAATGCCCCCATGGGTCAACCCTTGGCTGCTTTTGGCAATGTCCGTGTCATTTGGTCTGCACTTTTTGATCTTGTACGTGCCATTCTTAGCCCAAGTATTCGGCATCGTGCCCCTGAGCTTCAACGAGTGGCTTTTGGTTTTGGTTGTTGCGTTGCCCGTCATTCTTATTGACGAGATTCTGAAATTCGTGGGGAGGTGTACAAGTGGATCTCAAGCAAGAAGATCAAAACAAAAATCAGAGTAG 3171 0.4686 MGKGGQDYGRKENPIPDASDRETYKAWAKEVRECEEHFKVKVKSGLSTEEVENRRKIHGFNELEKHEGQSIWSLILDQFNDTLVRILLGAAIISFVLAWYDGDEGGEMEITAFVEPLVIFLILIVNAIVGVWQESNAEKALEALKEIQSEQASVIRDGVKVLSIPAKDLVPGDVVELKVGDKVPADMRVVELISSTLRLEQGSLTGESEAVNKTNKPVAADSDIQGKRCMVFAGTTVVNGNCICLVTQTGMGTEIGKVHMQIHEASQSEDDTPLKKKLNEFGEKLTMIIGLICILVWLINVKYFLTWEIVDGWPRNFKFSFEKCTYYFEIAVALAVAAIPEGLPAVITTCLALGTRKMAQKNALVRKLPSVETLGCTTVICSDKTGTLTTNQMAVSKLVAIGPNVDTLRAFKVEGTTYSPADGKIDNWPTGKLDANLQTLAKIAAICNDAGVSQSEHKFVAHGMPTEAALKVLVEKMGLPSDARSATKNTLLRCCDWWNEQDRRIATLEFDRDRKSMGVIANSGLGKNSLLVKGAVENVLERSSKIQLRDGSIVKLDNNARNLVLQALHEMSTSALRCLGFAYKDEIPKFEDYDGSDDHPAHQLLLNPSNYSSIESDLIFVGLVGLRDPPRGEVYNAIEDCRAAGIRVMVITGDNKNTAEAICREIGVFSPNEDISSKSLTGKDFMELRDKKAHLKQDGGLLFSRAEPKHKQEIVRLLKEEGEVVAMTGDGVNDAPALKLADIGIAMGIAGTEVAKEASDMVLADDNFSTIVAAVGEGRSIYNNMKAFIRYMISSNIGEVASIFLTAALGIPEGLIPVQLLWVNLVTDGPPATALGFNPPDKDIMKKPPRRSDDSLIDLWILFRYMVIGIYVGLATVGVFIIWYTHGSFLGIDLSGDGHTLVTYNQLANWGQCSSWTNFTASPFTAGARVLSFDADPCDYFQTGKVKAMTLSLSVLVAIEMFNSLNALSEDGSLLTMPPWVNPWLLLAMSVSFGLHFLILYVPFLAQVFGIVPLSFNEWLLVLVVALPVILIDEILKFVGRCTSGSQARRSKQKSE* 1057
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0908 1056 Pfam Cation transporting ATPase, C-terminus 813 1039 IPR006068 -
Lja1g0908 1056 Pfam haloacid dehalogenase-like hydrolase 378 742 - -
Lja1g0908 1056 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 388 626 IPR023299 GO:0000166
Lja1g0908 1056 Gene3D - 391 629 IPR023299 GO:0000166
Lja1g0908 1056 PRINTS P-type cation-transporting ATPase superfamily signature 752 764 - -
Lja1g0908 1056 PRINTS P-type cation-transporting ATPase superfamily signature 728 747 - -
Lja1g0908 1056 PRINTS P-type cation-transporting ATPase superfamily signature 644 654 - -
Lja1g0908 1056 PRINTS P-type cation-transporting ATPase superfamily signature 622 633 - -
Lja1g0908 1056 PRINTS P-type cation-transporting ATPase superfamily signature 381 395 - -
Lja1g0908 1056 PRINTS P-type cation-transporting ATPase superfamily signature 200 214 - -
Lja1g0908 1056 SFLD p-type atpase 362 780 IPR044492 -
Lja1g0908 1056 Pfam Cation transporter/ATPase, N-terminus 27 94 IPR004014 -
Lja1g0908 1056 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 320 402 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lja1g0908 1056 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 702 809 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lja1g0908 1056 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 118 227 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lja1g0908 1056 Gene3D - 77 1041 - -
Lja1g0908 1056 PANTHER CALCIUM-TRANSPORTING ATPASE 4 1053 - -
Lja1g0908 1056 SUPERFAMILY Calcium ATPase, transduction domain A 150 258 IPR008250 -
Lja1g0908 1056 Gene3D - 45 265 - -
Lja1g0908 1056 SUPERFAMILY HAD-like 379 832 IPR036412 -
Lja1g0908 1056 SUPERFAMILY Calcium ATPase, transmembrane domain M 25 1042 IPR023298 -
Lja1g0908 1056 SMART Cation_ATPase_N_a_2 25 99 IPR004014 -
Lja1g0908 1056 SFLD Haloacid Dehalogenase 362 780 - -
Lja1g0908 1056 MobiDBLite consensus disorder prediction 1 21 - -
Lja1g0908 1056 Pfam E1-E2 ATPase 147 361 - -
Lja1g0908 1056 Gene3D - 378 773 IPR023214 -
Lja1g0908 1056 ProSitePatterns E1-E2 ATPases phosphorylation site. 383 389 IPR018303 -
Lja1g0908 1056 PANTHER RETICULUM [ER]-TYPE CALCIUM ATPASE, PUTATIVE-RELATED 4 1053 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0908 Lja-Chr1 8882823 8889059 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0908 1 1056 Primary Pumps ATPases(2) AT1G07670 79.642 0.0 1733
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0908 K01537 - gmx:100788807 1895.17