Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0907 ATGCAAGGAAACCCCTCCAAAATGTCTCGCCAACCCCAACCACCACCGCCAAACCCAGCCACCGCCGATGACAGCCTCACTTTCTTCAACCAATCAATGGAGCTTGTCAATCTTCCCCCGACTCGAACCCGAACCCGAGCCCATATCTCTCCCACCCTCGGCGAACTTCTCAAACGTGTGGAAGATGCTCAACACCAACACCACCACCACAACACCACCACTACCATTGCTGAAAGTGATGAAAAACATCACGTTCTTGACCTCTCCTCCTCCTCTTCCTCATCACTTCCCTCTCACCCATTTTACCTCTCCTTCACCAACTTAACTTACAGCGTCAAGCTCCGCCGCAAGATGTCCCTCTCCCGCTGTTTCACCTCCTGCCGCAATTCCTCACCGGCAAACGAGCTACCAGAAACCAAACCCAGCGGCACTAAAATTCTCCTCAACGGAATCTCCGGCGAAGCCAGAGACGGCGAGATCATGGCAGTTCTCGGCGCCAGCGGCTCCGGCAAGTCCACACTCATCGACGCCCTCGCCGACAGAATCTCCAGGGAAAGCCTCAAAGGCACGGTGACGCTAAACGGCGACGTCTTGGACTCCAGCCTCATGAAAGTCATATCCGCTTACGTCATGCAAGATGACCTCCTCTTCCCCATGCTCACCGTCGAGGAAACGCTCACGTTCGCCGCCGAGTTCCGCCTCCCTCGCTCCCTCTCAAAGTCCAAGAAGAAAGCCCGCGTCCAAGCTCTCATCGACCAACTCGGCCTCCGCTCCGCCGCCGCAACCGTCATCGGCGACGAAGGCCACCGCGGCGTCAGCGGCGGCGAACGCCGCCGCGTCTCAATCGGAATCGACATCATCCACGATCCAATCATCCTCTTCCTCGACGAGCCAACCTCTGGTCTCGACTCCACCAGCGCCTTCATGGTGGTGAAGGTTCTCCAGCGAATCGCCCGGAGCGGCAGCATCGTGATCATGTCCGTCCATCAACCAAGCTACAGAATCCTCGGCCTGCTAGACCGTCTCATCTTCCTCTCCCACGGCCAAACCGTCTTCACCGGAGCTCCGGCGAGCCTCGCCACCTTCTTCTCCGAGTTCAACCACCCCATACCGGAAAACGAAAACCGGACTGAATTCGCACTGGACTTAATCCGGCAGCTCGAAGAAACCCCCGGCGGAACCAAAAGCCTTGTAGAGTTCAACAAATCATGGCAGTTGAAACACCAACGCGCCGTTGATAACCACCTTGACGGAGTTAAAGTGTCGTTAAAGGACGCAATCAGCGCGAGCATTTCTCGTGGGAAGTTAGTTTCAGGCGCCGCTAACGGTAACGGCGGTAAGAACTCAACGGCGTCAGTTCCGACGTTTGCTAACCCGTTCTGGATCGAGATGGCGGTTATTGGAAAAAGATCTCTAACAAACTCGAGGCGGATGCCGGAATTATTCGGGATCCGTTTGGGTGCAGTTCTCGTGACCGGTGGAATCCTGGCCACCATTTTCTGGCGGTTAGACAATTCCCCTAAAGGAGTTCAAGAGCGTTTGGGTTTCTTCGCCTTCGCCATGTCCACTACCTTCTACACCTGCGCCGAAGCTATACCAGTTTTCCTCCAGGAGCGTTACATCTTCATGAGGGAAACCGCCTACAACGCCTACCGCCGCTCCTCCTATGTCCTCTCCCACTCCGTCATCGCCCTTCCAGCACTCATCTTCCTCTCCTTCGCCTTCGCCGCAACAACTTTCTGGTCCGTCGGCCTAGCCGGCGGAACTTCCGGATTCTTCTTTTACTTCCTGACAATTGTAGCCTCCTTCTGGGCTGGGAGTTCGTTTGTGACATTCCTCTCCGGGGTGGTGTCCCACGTGATGCTCGGTTTCACGGTGGTTGTGGCGATCATGGCTTACTTCTTGCTCTTCAGCGGATTCTTCATCAGTAGAAACAGAATCCCTACGTACTGGTTATGGTTTCATTATCTGTCTCTGGTGAAGTATCCTTATGAAGGGGTGTTGCAGAATGAGTTTGACATTCAGCCGCCGCGGTGTTTCGTGAGGGGTGTTCAGATGTTTGACAGTACGCCGCTGGGCGATGTGCCGGCGGCGTTGAAGGTGCAGCTGTTGAAGAGTATGAGTAAGACGCTGGGGGTGAACATCACGAGCTCGACGTGCGTGACCACGGGAGCGGATATACTGAGGCAGCAGGGGATCACGCAGCTTAGTAAGTGGAACTGCTTGTGGATCACTATTGCTTGGGGGTTCTTCTTTCGCTTCCTGTTTTACTTGGCACTCCTGTTAGGAAGCAAGAACAAGAGGAGGTAG 2310 0.5511 MQGNPSKMSRQPQPPPPNPATADDSLTFFNQSMELVNLPPTRTRTRAHISPTLGELLKRVEDAQHQHHHHNTTTTIAESDEKHHVLDLSSSSSSSLPSHPFYLSFTNLTYSVKLRRKMSLSRCFTSCRNSSPANELPETKPSGTKILLNGISGEARDGEIMAVLGASGSGKSTLIDALADRISRESLKGTVTLNGDVLDSSLMKVISAYVMQDDLLFPMLTVEETLTFAAEFRLPRSLSKSKKKARVQALIDQLGLRSAAATVIGDEGHRGVSGGERRRVSIGIDIIHDPIILFLDEPTSGLDSTSAFMVVKVLQRIARSGSIVIMSVHQPSYRILGLLDRLIFLSHGQTVFTGAPASLATFFSEFNHPIPENENRTEFALDLIRQLEETPGGTKSLVEFNKSWQLKHQRAVDNHLDGVKVSLKDAISASISRGKLVSGAANGNGGKNSTASVPTFANPFWIEMAVIGKRSLTNSRRMPELFGIRLGAVLVTGGILATIFWRLDNSPKGVQERLGFFAFAMSTTFYTCAEAIPVFLQERYIFMRETAYNAYRRSSYVLSHSVIALPALIFLSFAFAATTFWSVGLAGGTSGFFFYFLTIVASFWAGSSFVTFLSGVVSHVMLGFTVVVAIMAYFLLFSGFFISRNRIPTYWLWFHYLSLVKYPYEGVLQNEFDIQPPRCFVRGVQMFDSTPLGDVPAALKVQLLKSMSKTLGVNITSSTCVTTGADILRQQGITQLSKWNCLWITIAWGFFFRFLFYLALLLGSKNKRR* 770
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0907 769 MobiDBLite consensus disorder prediction 1 24 - -
Lja1g0907 769 Pfam ABC transporter 148 300 IPR003439 GO:0005524
Lja1g0907 769 Gene3D - 139 366 IPR027417 -
Lja1g0907 769 PANTHER ABC TRANSPORTER G FAMILY MEMBER 16 50 762 - -
Lja1g0907 769 Pfam ABC-2 type transporter 329 423 IPR043926 GO:0140359
Lja1g0907 769 Pfam ABC-2 type transporter 466 672 IPR013525 GO:0016020|GO:0140359
Lja1g0907 769 ProSitePatterns ABC transporters family signature. 272 286 IPR017871 GO:0005524
Lja1g0907 769 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 50 762 - -
Lja1g0907 769 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 142 365 IPR027417 -
Lja1g0907 769 SMART AAA_5 157 372 IPR003593 -
Lja1g0907 769 MobiDBLite consensus disorder prediction 62 81 - -
Lja1g0907 769 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 131 372 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0907 Lja-Chr1 8861696 8864361 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0907 147 332 Calmodulin-binding Proteins AT2G36910 29.630 9.27e-10 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0907 K05681 - gmx:100781319 1107.43