Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0901 ATGGTTAGATCCTGCTGGAAAATAACTGGGGAGGGTGGTGATGATGATGTGAATGGAAGAGTTGATGGGTTGCTGTGGTATAAGGATTTGGGGAACCATCTTTATGGGGAATTCTCAATGGCTGTGATGCAAGCAAATAGTTCATTGGAGGATTGTAGCCAACTTGAATCTGGACCCTTGAGTTTTGACAATTTGGGTCCTCAAGGAACCTTTATAGGTGTTTATGATGGTCATGGTGGAACCTCAGCCTCTCAGTATGTCAGTGACAATCTTTTCCACAACTTCAAGAGTATTGCAGCTGAACACCAAGGCATTTCAGAAAAGGTTATCAGAAGGGCCTTTCAGGAAACAGATGAGGGGTTTCTCTCACTTGTCAAGAAGCAGTGGCTAAGCGAGCCACAGATTGCATCCACTGGTTCATGTTGTTTAGCAGGAATAATTTGCAATGGCATGCTATATGTTGCAAATGCAGGAGACTCAAGGGTGGTGTTAGGAAGATTGGAGAGGGCAACAAGGGAAACATTAGCTTTCCAATTATCTGAAGAACACAATGTTAACATAGAAACTGAGAGAGATGAAGTTCGGTCAAAGCACCCCTATGATTCACAAATTGTGGCCATGAAACACAATGTTTGGCGTGTGAAAGGTCTCATACAGGTTTCAAGATCCATAGGTGATGCATATCTGAAGAATGCAGAATTCAACAAGGAGCCTCTACCACAAAAGTTTAGACTACCTGAAACTTTCTTCAAGCCAATTCTTAGTTGGGAGCCATCAATAACAACGCATAAACTCCACTCTAATGATCAATTTCTCATATTTGCTTCTGACGGCTTATGGGAGCAACTTAGCAACCAAGAGGCTGTCAATATAGTCAGCAACAACCCTCGAAACGGAATTGCTAGGCGGCTCGTGAAAGCTGCGCTAAGAGAAGCAGCTAAGAAGAGAGAAATGAGAGTCTCAGACCTCCAGAAGATTGAACAAGGAGTGAGGAGACACTTCCATGATGACATTACAGTAATTGTTGTATTTCTGAATCCCAAACTGATAGATAATAACTCTCTCTGGGGTTCTCCACTTTCTATCAGAGGAGGTGGACCAGCCAATTCTTAG 1113 0.4286 MVRSCWKITGEGGDDDVNGRVDGLLWYKDLGNHLYGEFSMAVMQANSSLEDCSQLESGPLSFDNLGPQGTFIGVYDGHGGTSASQYVSDNLFHNFKSIAAEHQGISEKVIRRAFQETDEGFLSLVKKQWLSEPQIASTGSCCLAGIICNGMLYVANAGDSRVVLGRLERATRETLAFQLSEEHNVNIETERDEVRSKHPYDSQIVAMKHNVWRVKGLIQVSRSIGDAYLKNAEFNKEPLPQKFRLPETFFKPILSWEPSITTHKLHSNDQFLIFASDGLWEQLSNQEAVNIVSNNPRNGIARRLVKAALREAAKKREMRVSDLQKIEQGVRRHFHDDITVIVVFLNPKLIDNNSLWGSPLSIRGGGPANS* 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0901 370 SUPERFAMILY PP2C-like 46 346 IPR036457 -
Lja1g0901 370 ProSitePatterns PPM-type phosphatase domain signature. 71 79 IPR000222 GO:0043169
Lja1g0901 370 ProSiteProfiles PPM-type phosphatase domain profile. 34 345 IPR001932 -
Lja1g0901 370 Pfam Protein phosphatase 2C 67 314 IPR001932 -
Lja1g0901 370 PANTHER SERINE/THREONINE PHOSPHATASE FAMILY, 2C DOMAIN PROTEIN 3 368 - -
Lja1g0901 370 SMART PP2C_4 31 343 IPR001932 -
Lja1g0901 370 PANTHER ALPHABET, ISOFORM E-RELATED 3 368 - -
Lja1g0901 370 Gene3D - 28 354 IPR036457 -
Lja1g0901 370 CDD PP2Cc 35 345 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0901 Lja-Chr1 8820054 8823035 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0901 1 366 PP2C-type Phosphatase Gene Family AT3G12620 64.770 6.67e-180 503
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0901 K01102 - gmx:100815902 578.941
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0901 1 8820054 8823035 Lja5g2726 5 54108694 54112253 PCT