Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0894 ATGGATATTCAAGAATCAGAAAGGGTGGTGGTTGCCAAACCAGTTGCTTCAAGGCCTACCTGTTCTAGTTTCAAATCTTTCTCAGAGCTCCTAGCAGGAGCAATCAATGACTCTCCCCCTACTGCATCTTCTCAAGCTACTACAGTTTCTGCCATTAGACCAAAGACAGTTAGGTTCAAGCCAGCAATGAATCATTGCCCCACTCCTGGGTTTATTTCTTCTCAGGGTGACAGTTATGGAGCTGCATTTGGTGATTCCGCTGACAAGAGTCCTAAACCTGACACCAACCAGTCCCTCATATACAAGCCAATGGCAAAGGTTGTGTCAAAGACAACTGCTTCTCTTCTGTCAAACATGGGAAACTGCAGTACTAGTCAGCAACAACCACTCCAACCAATGGAGGCCAATCTTCAACATTCCAACCATGAAAAACTCAGAACCAAAGCGAGCTCAAATCTTCATCAGAGCATTACTCCTTATGCAGAAACATGTCAAACCACTGAGCCTTGTAAGATAGTACAACAGAACCTGGAGGAAGACCAAAAAGCTTTAACATCAACTGCTAATGGTGATCGACCTTCTTATGATGGTTATAACTGGAGAAAATATGGGCAGAAACAAGTTAAAGGAAGCGAATTCCCGCGAAGTTATTATAAGTGCACGTATCCTAATTGTCCAGTGAAGAAGAAGGTTGAAAGATCATTTGATGGTCAGATTGCAGAAATTGTTTATAAAGGTGAACACAGCCATGCAAAGCCACAGCTTCCTAAGAGAAACTCAGCAGGAGGGGCACAAGGTTCAGTGTCTGAGAGTGAGAGGAATGAAGACAATGAAGGTAGAATGGAGAACCAGAATGACACAGGAATAGCGTCTGTGCATTCAGCTTATCATGTCAAAGCTCCACAGGCTAATAATGATTCTGCTGTTCTGATTGGTGCGATGAATGCTGGTGGAGGAAACACAGAAAATTCTTGTGGTCTGAGTGGGGAATGCGAGGGAGCAAGTAAGGGATTTGAGGCAGAGGAAGAGGAATCCAGAAGTAAAAGAAGGAAAAATGAGAATCAATCCAATGAAGCAGCAGTATCAGAGGAAGGTTTAGCAGAGCCACGCATTGTGATGCAAAGTTCAATGGATTCTGAAATAATAGGAGATGGCTTTCGCTGGAGGAAATATGGGCAGAAAGTGGTGAAGGGAAATCCATATCCCAGAAGTTACTATAGATGTACTAATATCAAGTGTAACGTTCGCAAACACGTGGAGAGAGCAATAGATGACCCGAAGTCATTTGTCACTACCTATGAGGGAAAGCACAACCATGAGATGCCACTCAAGAACACAGCAAGTGTGGCCTCTGAAAAAAATTCACAGGCTTAA 1374 0.4338 MDIQESERVVVAKPVASRPTCSSFKSFSELLAGAINDSPPTASSQATTVSAIRPKTVRFKPAMNHCPTPGFISSQGDSYGAAFGDSADKSPKPDTNQSLIYKPMAKVVSKTTASLLSNMGNCSTSQQQPLQPMEANLQHSNHEKLRTKASSNLHQSITPYAETCQTTEPCKIVQQNLEEDQKALTSTANGDRPSYDGYNWRKYGQKQVKGSEFPRSYYKCTYPNCPVKKKVERSFDGQIAEIVYKGEHSHAKPQLPKRNSAGGAQGSVSESERNEDNEGRMENQNDTGIASVHSAYHVKAPQANNDSAVLIGAMNAGGGNTENSCGLSGECEGASKGFEAEEEESRSKRRKNENQSNEAAVSEEGLAEPRIVMQSSMDSEIIGDGFRWRKYGQKVVKGNPYPRSYYRCTNIKCNVRKHVERAIDDPKSFVTTYEGKHNHEMPLKNTASVASEKNSQA* 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0894 457 MobiDBLite consensus disorder prediction 247 284 - -
Lja1g0894 457 SUPERFAMILY WRKY DNA-binding domain 376 442 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lja1g0894 457 MobiDBLite consensus disorder prediction 335 357 - -
Lja1g0894 457 ProSiteProfiles WRKY domain profile. 377 442 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja1g0894 457 Coils Coil 338 358 - -
Lja1g0894 457 PANTHER WRKY TRANSCRIPTION FACTOR 44 6 445 - -
Lja1g0894 457 SMART WRKY_cls 194 252 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja1g0894 457 SMART WRKY_cls 382 441 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja1g0894 457 Gene3D WRKY domain 178 254 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lja1g0894 457 Gene3D WRKY domain 367 443 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lja1g0894 457 MobiDBLite consensus disorder prediction 436 457 - -
Lja1g0894 457 SUPERFAMILY WRKY DNA-binding domain 193 253 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lja1g0894 457 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 6 445 IPR044810 GO:0003700
Lja1g0894 457 Pfam WRKY DNA -binding domain 196 250 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja1g0894 457 Pfam WRKY DNA -binding domain 384 440 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja1g0894 457 ProSiteProfiles WRKY domain profile. 196 253 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja1g0894 457 MobiDBLite consensus disorder prediction 329 368 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0894 Lja-Chr1 8783090 8791076 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0894 94 443 WRKY Transcription Factor Family AT2G37260 43.351 1.78e-84 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lja1g0894 WRKY 6.6e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0894 - - gmx:100794069 676.011