Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0889 ATGCTGGATCTCAACCTCAACGCCGCCGACTCCGTTCACATGGAAAGCTCCGGCAGCTTCGACTCCTCCGTCGTCAACGCCGCCGATACCGAAGATTCCTCCTCCTTCGGCGAAGCCTACGCGTACAACTTCGCCATCCTCAACACCAGCACCGCCGTCGACGAACCCACCACCACCTCCGCGGCAGTTCACCTCCCCTACGCCGGTGACCACTCTGTTCGGACGATCGAGTTTTTTCCGACCACCGAGTCGCAGAGATGGTCAGATTTCTTGCCGGATCATCCCGGCGCCGTGCCGGAACAGACGATCGTCGCTCCCCGGCCGCAGCAGGTGAAGAAGAGCCGACGTGGACCGAGGTCGCGAAGCTCGCAGTATCGCGGCGTTACTTTCTATCGGAGGACGGGAAGATGGGAATCGCATATATGGGATTGTGGGAAACAAGTGTACTTAGGTGGATTTGATACTGCACATGCTGCAGCGAGGGCGTATGATCGAGCTGCAATCAAGTTCCGTGGCGTTGATGCGGATATCAATTTCAACGTGAGCGATTATGATGAAGATATAAAGCAGATGAGTAACTTCACCAAGGAAGAGTTTGTGCATATTCTGCGGCGGCAGAGCACGGGTTTCTCAAGGGGGAGCTCCAGATACAGGGGAGTTACTCTCCATAAATGTGGGAGATGGGAAGCTCGTATGGGGCAGTTTCTTGGGAAGAAGTACATATATCTTGGGCTATTCGATAGTGAATTAGAGGCTGCAAGAGCTTATGACAAGGCAGCTATAAAATGCAATGGAAAGGAAGCAGTGACAAACTTTGAGGCCAGCTCATATGAGGGGGAGCTAATTTCTCAGTCTGATAATGAAGATAACAAGCGAAGTATTGATCTTAACTTGGGCATAGCTCCCCCTTCTACCTATGATGGTCAAATGATGAATATTGAACACCAAAATGTGAGTGGTTTACAAGTTAATCGTAGCTGGGATGGTATTTCTGTTGATAATAGTGTTATGGTAAAGCTGGAGAAATGTACATATGGATTGAATTGA 1047 0.5024 MLDLNLNAADSVHMESSGSFDSSVVNAADTEDSSSFGEAYAYNFAILNTSTAVDEPTTTSAAVHLPYAGDHSVRTIEFFPTTESQRWSDFLPDHPGAVPEQTIVAPRPQQVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNVSDYDEDIKQMSNFTKEEFVHILRRQSTGFSRGSSRYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSELEAARAYDKAAIKCNGKEAVTNFEASSYEGELISQSDNEDNKRSIDLNLGIAPPSTYDGQMMNIEHQNVSGLQVNRSWDGISVDNSVMVKLEKCTYGLN* 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0889 348 CDD AP2 124 182 IPR001471 GO:0003700|GO:0006355
Lja1g0889 348 PRINTS Ethylene responsive element binding protein signature 255 275 IPR001471 GO:0003700|GO:0006355
Lja1g0889 348 PRINTS Ethylene responsive element binding protein signature 217 228 IPR001471 GO:0003700|GO:0006355
Lja1g0889 348 SUPERFAMILY DNA-binding domain 215 274 IPR016177 GO:0003677
Lja1g0889 348 Gene3D AP2/ERF domain 215 274 IPR036955 GO:0003700|GO:0006355
Lja1g0889 348 Gene3D AP2/ERF domain 123 182 IPR036955 GO:0003700|GO:0006355
Lja1g0889 348 ProSiteProfiles AP2/ERF domain profile. 124 180 IPR001471 GO:0003700|GO:0006355
Lja1g0889 348 Pfam AP2 domain 124 172 IPR001471 GO:0003700|GO:0006355
Lja1g0889 348 Pfam AP2 domain 215 264 IPR001471 GO:0003700|GO:0006355
Lja1g0889 348 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 312 - -
Lja1g0889 348 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-7 1 312 - -
Lja1g0889 348 ProSiteProfiles AP2/ERF domain profile. 216 273 IPR001471 GO:0003700|GO:0006355
Lja1g0889 348 CDD AP2 215 275 IPR001471 GO:0003700|GO:0006355
Lja1g0889 348 SUPERFAMILY DNA-binding domain 123 182 IPR016177 GO:0003677
Lja1g0889 348 SMART rav1_2 124 186 IPR001471 GO:0003700|GO:0006355
Lja1g0889 348 SMART rav1_2 216 279 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0889 Lja-Chr1 8722140 8724955 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0889 103 313 AP2-EREBP Transcription Factor Family AT4G36920 75.701 1.82e-97 294
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Lja1g0889 AP2 2.7e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0889 K09284 - gmx:100808212 484.567
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0889 1 8722140 8724955 Lja1g0889 1 8722140 8724955 ECH