Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0888 ATGGACATTTCGCCGACATTGGAGAGTTTCTTCGAGCTGCCCTACCAGCAAAGCAACCGAAATTTCTTCAGAGATCAGTTCGACGATTTTGAAAATTTCAGTCACCATTTCAACCCTCCAACTGAAATGGTGCATTGCAATGGTTCCGGCAGCGGCGAAGGTAATGCGAGTAGAAGCAGAACGAAGAAGAAGGAGAAGAAGGAGGAGGAGGAGGAGGAGAAACCCGCCAGTAGCAGTAGAAGGAAGAAGAGCCCTTCATCATGTGTGTTGGATTTTAATGAAATAAAGAAGCATTTTGGGCTTAAGATATCAGAGGCGGCGAAGGAAATGAATGTTGGGTTGACCCTCCTCAAGAGAAGGTGCAGAGAGCTCAATATTATGAGGTGGCCACACAGACAACTCAAGAGCTTGAAGTCAGTCATCGATAGTGTCAAGGAATTGGGACGGGAAGATGAGGTTGCCGAGTTGGAGAAGCAGAAAATTATGTTGGAGAGAATGCCGGGAATGAAGCTGAGTGAGGAAACACAGAAGCTGAGACAATCTTGTTTTAAAGCTAATTACAATAGGAAGAGAAGAAAACAGAACACACAATAA 594 0.4478 MDISPTLESFFELPYQQSNRNFFRDQFDDFENFSHHFNPPTEMVHCNGSGSGEGNASRSRTKKKEKKEEEEEEKPASSSRRKKSPSSCVLDFNEIKKHFGLKISEAAKEMNVGLTLLKRRCRELNIMRWPHRQLKSLKSVIDSVKELGREDEVAELEKQKIMLERMPGMKLSEETQKLRQSCFKANYNRKRRKQNTQ* 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0888 197 PANTHER PROTEIN RKD4 52 192 IPR044607 GO:0003700
Lja1g0888 197 PANTHER PROTEIN RKD4 52 192 - -
Lja1g0888 197 MobiDBLite consensus disorder prediction 57 80 - -
Lja1g0888 197 Pfam RWP-RK domain 90 137 IPR003035 -
Lja1g0888 197 ProSiteProfiles RWP-RK domain profile. 74 158 IPR003035 -
Lja1g0888 197 MobiDBLite consensus disorder prediction 41 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0888 Lja-Chr1 8710136 8711203 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0888 90 191 AtRKD Transcription Factor Family AT5G53040 55.882 5.83e-35 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Lja1g0888 RWP-RK 1.8e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0888 - - aprc:113850801 187.578