Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0887 ATGAATGTTGGGTTGACTCTCCTCAAGAAAAGGTGCAGAGAGCTCAATATTATGAGGTGGCCACACAGACAACTTCAGAGCTTGAAGTCAGTCATCGACAATGTCAAGGAATTGGGACTAGAAGATGAGCTTGCCAAGTTGGAGGAGCAGAAAAGAATGTTGGAGAGAACACCGGGAATGAAGCTGAGTGAGAAAACAATGAAGCTCAGACAATCTTGTTATAAAACTAATTACAACAGGAGGAGGAGAAAACAGAACACTATAGGGAAGGACTCATCACTTGGTAGCTAG 291 0.4296 MNVGLTLLKKRCRELNIMRWPHRQLQSLKSVIDNVKELGLEDELAKLEEQKRMLERTPGMKLSEKTMKLRQSCYKTNYNRRRRKQNTIGKDSSLGS* 97
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0887 96 Pfam RWP-RK domain 1 28 IPR003035 -
Lja1g0887 96 ProSiteProfiles RWP-RK domain profile. 1 49 IPR003035 -
Lja1g0887 96 Coils Coil 37 57 - -
Lja1g0887 96 PANTHER PROTEIN RKD4 1 83 IPR044607 GO:0003700
Lja1g0887 96 MobiDBLite consensus disorder prediction 76 96 - -
Lja1g0887 96 PANTHER PROTEIN RKD4 1 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0887 Lja-Chr1 8704704 8705522 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0887 1 91 AtRKD Transcription Factor Family AT5G53040 53.846 8.00e-31 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Lja1g0887 RWP-RK 7.9e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0887 - - aprc:113850801 129.028