Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0886 ATGGCCAACTTCACAGAGCTAGATGATCATGGCCTCAACTGTTGCAATGTTCAACAAACCGAGACCGACAACAGAAAGAAGAAAGAGAAACAGGAGGAGAAACCCGGTAGCAAAAGAAGGAAGAAGAAGAATTCTTCATGTGTCTTGGAATTTGATGAAATCAAAAAGCATTTTGGGGTGAAGATAACACAGGCAGCGAAGGAAATGAATGTTGGGTTGACCCTCCTCAAGAGAAGGTGCAGAGAGCTCAATATTGTGAGGTGGCCACACAGACAACTCAAGAGCTTGAAGTCAGTCATCGAAAATGTCAAGGAATTGGGACTGGAAGATGAGATTGCGAAGTTGGAGAAGCACAAAAGCATGTTGGAGAGAATACCAGGAATGAAGCTGAGTGAGGAAACAAAGAAACTGAGACAATATTGTTTTAAAGCTAATTACAACAGGAGGAGGAGGAGAAAGCAGAACACACAAGGCTAA 477 0.4277 MANFTELDDHGLNCCNVQQTETDNRKKKEKQEEKPGSKRRKKKNSSCVLEFDEIKKHFGVKITQAAKEMNVGLTLLKRRCRELNIVRWPHRQLKSLKSVIENVKELGLEDEIAKLEKHKSMLERIPGMKLSEETKKLRQYCFKANYNRRRRRKQNTQG* 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0886 158 MobiDBLite consensus disorder prediction 18 44 - -
Lja1g0886 158 MobiDBLite consensus disorder prediction 21 44 - -
Lja1g0886 158 ProSiteProfiles RWP-RK domain profile. 31 117 IPR003035 -
Lja1g0886 158 Pfam RWP-RK domain 49 96 IPR003035 -
Lja1g0886 158 PANTHER PROTEIN RKD4 22 152 IPR044607 GO:0003700
Lja1g0886 158 PANTHER PROTEIN RKD4 22 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0886 Lja-Chr1 8682520 8683741 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0886 49 150 AtRKD Transcription Factor Family AT5G53040 59.804 2.12e-38 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Lja1g0886 RWP-RK 1.6e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0886 - - aprc:113850801 188.348