Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0885 ATGCTAGTGGGAAAGAATATAAGAAAACGAACGGTGGTGATAGGCCTCAGTCTTCGATCTCAGCGTCTCCTCCTTACTTTCTTCTCCAGCGTCCGATTCCTCTCTCTCCACTCTCACCGATCTCATCTCACTCACTCGCTCTCTCTCGCGCCAAATACAAATTCACAGATTAGGGTTCCGTCCACCACCATGTCCGACGGTCCAACCAGTCCAGGCGCCGGCGGCAGCCACGACAGCGGCGGCGACCACAGCCCTCGCTCCAACATCCGCGAACAAGACAGGTACCTTCCAATCGCCAACATCAGCCGCATCATGAAGAAAGCTCTCCCCGCCAATGGCAAAATCGCCAAAGACGCAAAGGAGACTGTTCAAGAGTGCGTCTCCGAATTCATCAGCTTCATCACCAGCGAGGCCTCTGATAAGTGTCAGCGAGAGAAGAGGAAGACGATTAACGGTGACGATTTGCTCTGGGCGATGGCGACGCTCGGTTTCGAGGATTATATTGATCCCCTTAAGATTTACCTCACCAGATACAGAGAGATGGAGGGTGATACTAAGGGTTCAGGAGCAAAAGGTGGAGATTCATCTGCCAAGAAAGATGTTCAGCCGAGTCCTAATGCTCAGCTTGCTCATCAGGGTTCTTTCTCACAGAGTGTTAGTTACACGAATTCTCAGGGTCAACATATGATGGTCCAAATGCAAGGCCCAGAGTAA 714 0.514 MLVGKNIRKRTVVIGLSLRSQRLLLTFFSSVRFLSLHSHRSHLTHSLSLAPNTNSQIRVPSTTMSDGPTSPGAGGSHDSGGDHSPRSNIREQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLTRYREMEGDTKGSGAKGGDSSAKKDVQPSPNAQLAHQGSFSQSVSYTNSQGQHMMVQMQGPE* 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0885 237 MobiDBLite consensus disorder prediction 47 92 - -
Lja1g0885 237 Gene3D Histone, subunit A 82 223 IPR009072 GO:0046982
Lja1g0885 237 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-2-RELATED 64 224 - -
Lja1g0885 237 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 64 224 IPR027113 GO:0001228|GO:0006355|GO:0016602
Lja1g0885 237 MobiDBLite consensus disorder prediction 199 231 - -
Lja1g0885 237 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 95 159 IPR003958 -
Lja1g0885 237 MobiDBLite consensus disorder prediction 47 72 - -
Lja1g0885 237 MobiDBLite consensus disorder prediction 183 237 - -
Lja1g0885 237 PRINTS CCAAT-binding transcription factor subunit A signature 123 141 - -
Lja1g0885 237 PRINTS CCAAT-binding transcription factor subunit A signature 142 160 - -
Lja1g0885 237 PRINTS CCAAT-binding transcription factor subunit A signature 161 179 - -
Lja1g0885 237 ProSitePatterns NF-YB/HAP3 subunit signature. 126 142 IPR003956 GO:0005634|GO:0006355|GO:0043565
Lja1g0885 237 SUPERFAMILY Histone-fold 92 206 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0885 Lja-Chr1 8674765 8678120 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0885 70 235 CCAAT-HAP3 Transcription Factor Family AT2G37060 77.778 5.70e-89 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Lja1g0885 CBFD_NFYB_HMF 2.2e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0885 K08065 - gmx:100820170 298.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0885 1 8674765 8678120 Lja1g0885 1 8674765 8678120 ECH
Lja1g0885 1 8674765 8678120 Lja5g1147 5 11563547 11564550 PCT