Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0882 ATGGGGAAGACTCGAGGAATGGGAGCTGCCCGCAAGCTGATGTCTCACCGTAGGCGGCAACGGTGGGCAGACAAGTCATACAAAAAATCTCATCTTGGAAATGAATGGAAGAAGCCTTTTGCTGGTTCATCCCATGCCAAGGGCATTGTTCTTGAAAAGATAGGTATTGAGGCTAAGCAGCCTAACTCTGCCATTCGAAAATGTGCTAGAGTTCAACTCATCAAAAATGGGAAGAAGATTGCTGCATTTGTTCCAAATGATGGTTGCTTAAATTACATTGAAGAGAATGATGAAGTATTGATTGCTGGATTTGGACGTAAAGGTCATGCCGTCGGTGATATTCCTGGTGTCAGGTTCAAGGTTGTGAAGGTTTCTGGTGTCTCCCTCCTAGCTCTTTTCAAGGAAAAGAAGGAGAAGCCTAGGTCTTAA 429 0.4452 MGKTRGMGAARKLMSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS* 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0882 142 MobiDBLite consensus disorder prediction 10 25 - -
Lja1g0882 142 SUPERFAMILY Nucleic acid-binding proteins 20 140 IPR012340 -
Lja1g0882 142 Gene3D - 25 142 IPR012340 -
Lja1g0882 142 MobiDBLite consensus disorder prediction 1 26 - -
Lja1g0882 142 PIRSF RPS12p_RPS12a_RPS23e_RPS12o 16 142 IPR006032 GO:0003735|GO:0005840|GO:0006412
Lja1g0882 142 CDD Ribosomal_S23 26 139 IPR005680 GO:0003735|GO:0006412|GO:0015935
Lja1g0882 142 Pfam Ribosomal protein S12/S23 31 141 IPR006032 GO:0003735|GO:0005840|GO:0006412
Lja1g0882 142 PANTHER BNACNNG03140D PROTEIN 1 142 - -
Lja1g0882 142 TIGRFAM uS12_E_A: ribosomal protein uS12 6 141 IPR005680 GO:0003735|GO:0006412|GO:0015935
Lja1g0882 142 PANTHER 30S RIBOSOMAL PROTEIN S12 FAMILY MEMBER 1 142 IPR006032 GO:0003735|GO:0005840|GO:0006412
Lja1g0882 142 ProSitePatterns Ribosomal protein S12 signature. 59 66 IPR006032 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0882 Lja-Chr1 8644532 8646254 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0882 1 142 Cytoplasmic Ribosomal Protein Gene Family AT5G02960 95.070 1.11e-95 270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0882 K02973 - fve:101294077 284.648
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0882 1 8644532 8646254 Lja1g0882 1 8644532 8646254 ECH
Lja5g2698 5 53639560 53641451 Lja1g0882 1 8644532 8646254 ECH
Lja1g0882 1 8644532 8646254 Lja3g0795 3 8051315 8053599 ECH