Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0880 ATGGGGCGGAAGGGAAATTGGTTTTCTACAGTGAAGAAAGCACTCAGCCCTGACTCAAAGGGGAAAAAAGATCAGAAATCAAGTCCATCAAAGAAGAAATGGTTCGGGAAGCAAAAATTGCTGACTTTAGACTCACACTCAGGAACTGATAAAGCACCACCTCTGCCTCCACCAGAAGAGAATAAATTAAATGATATTGAAAATGCAAACAGTCACCATCATGTTGCTGAAGTTGTAACTTCCGCGGCTCCTGAGGAACCTGCTCCTTCTGTTCAGGCAGCAGTTGTTAGGATTGGAGCTGGTACAAATGCTCAGTTTGCCGGTAAGCCAAAGGATGAAGTGGCTGCAATCAAGATTCAAACAGCTTTTCGGGGACACTTGGCAAGAAGAGCATTGAGAGCTTTAAGAGGGTTGGTCAGGTTGAAAACGTTGATGGAAGGGCCCGTTGTAAAACGCCAAGCCATAAGTACTCTCCGCTCTATGCAGACGTTAGCTCGCGTGCAATCTCAAATTCATTCTAGGAGGGTCAGAATGTTAGAGGAGAATCAGGCTCTGCAGAGACAAATCTTACAAAAGCATGCAAGAGAGCTTGAGAGCATGCGGATTGGAGAGGAATGGGATGATAGCCTGCAGTCAAAAGAGCAAATCGAAGCCAAATTGCTACACAAGTATGAGGCTGCTACGAGAAGAGAAAGAGCAATGGCTTATGCATTCACTCATCAGCAAAATTGGAAGAACTCATCTAGATCTACAAACCCAATGTTCATGGATCCAACCAATCCTACCTGGGGATGGAGCTGGTTGGAAAGATGGATGGCAGCCCGGTCCTACGAGAGTCGTAACCTTATGGATAAAGAGCTGAATGATCATTCATCTGTAAGAAGTTCTAGCCGCAGCATTACTGGTGGAGAAATCAACAGATCATTTGCTCGTTTCCAGCTCAATTCTGAAATCCATTCTCCAGCAGCCAGCCAAAATGCAGGCTCACCTAGCTTTCAGCCCAACTCAACTCCTTCCAGGACAGCTTCTGCTAAGAAACCGAAGAAGGTAACCCCAAAGGGCAACTGGGTTATGGATGACGACTCCAAAAGTATGGCCAGTGTACAGTCAGACCGGTTCCGGAGGCACTCCATTGCTGGGTCATCAGTGAGAGATGATGAGAGCCTTGCTAGCTCTCCATCAGTTCCAAGTTATATGGTGCCGACTCAATCTGCAAAAGCTAAGTCCAGGACACAGAGTCCATTAGCCCCAGAAAATGGGAAAGCCGAAAAAGGGTCCTTTGGAACTGCAAAGAAGCGTCTTTCTTTCCCAGCTTCGCCTGCCAGACCAAGGCGTCATTCAGGTCCACCAAAGGTAGAAAGCAGCTTGAATGCTGAGTTTCCTGTGAACAATGGTGTGGCCAGTTGA 1407 0.4684 MGRKGNWFSTVKKALSPDSKGKKDQKSSPSKKKWFGKQKLLTLDSHSGTDKAPPLPPPEENKLNDIENANSHHHVAEVVTSAAPEEPAPSVQAAVVRIGAGTNAQFAGKPKDEVAAIKIQTAFRGHLARRALRALRGLVRLKTLMEGPVVKRQAISTLRSMQTLARVQSQIHSRRVRMLEENQALQRQILQKHARELESMRIGEEWDDSLQSKEQIEAKLLHKYEAATRRERAMAYAFTHQQNWKNSSRSTNPMFMDPTNPTWGWSWLERWMAARSYESRNLMDKELNDHSSVRSSSRSITGGEINRSFARFQLNSEIHSPAASQNAGSPSFQPNSTPSRTASAKKPKKVTPKGNWVMDDDSKSMASVQSDRFRRHSIAGSSVRDDESLASSPSVPSYMVPTQSAKAKSRTQSPLAPENGKAEKGSFGTAKKRLSFPASPARPRRHSGPPKVESSLNAEFPVNNGVAS* 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0880 468 MobiDBLite consensus disorder prediction 16 31 - -
Lja1g0880 468 Pfam Protein of unknown function (DUF4005) 380 446 IPR025064 -
Lja1g0880 468 PANTHER IQ-DOMAIN 5-RELATED 1 464 - -
Lja1g0880 468 MobiDBLite consensus disorder prediction 384 416 - -
Lja1g0880 468 ProSiteProfiles IQ motif profile. 112 140 IPR000048 GO:0005515
Lja1g0880 468 Pfam IQ calmodulin-binding motif 115 133 IPR000048 GO:0005515
Lja1g0880 468 SMART iq_5 111 133 IPR000048 GO:0005515
Lja1g0880 468 MobiDBLite consensus disorder prediction 321 468 - -
Lja1g0880 468 MobiDBLite consensus disorder prediction 1 65 - -
Lja1g0880 468 Gene3D - 37 138 - -
Lja1g0880 468 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 1 464 - -
Lja1g0880 468 MobiDBLite consensus disorder prediction 321 344 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0880 Lja-Chr1 8633836 8637671 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0880 1 468 IQD Protein Family AT5G03040 51.646 5.14e-140 408
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0880 - - gmx:100800080 700.664
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0880 1 8633836 8637671 Lja1g0880 1 8633836 8637671 ECH
Lja1g0880 1 8633836 8637671 Lja5g2693 5 53564222 53568353 PCT