Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0877 ATGGCCAACGACTCGTTGTTTGCCGGCATTCATTTCGATAGAAAGAAGTTCGGCGCTGATATTGCCAGGTTCCAGAAAAAAGAGAACGCTAACGATTCAGTGAAGATTTGGAGCGTGACTGAAGATGAAAGTGAGAAAACAGAAGATACAGTCAAGGAGAGAGCACCGTCTGTGAAGAAGAGGAAGCGCAAGAGAAACTCTCGCGAAGAAACGGTTGAAGGGTTTAGTGTGTTTAGAAGTTCAGCACACGAGCCACAGTTGGAATTGAATGATGAAGTCCAACCTGACGATGATGAGTCCATTCGACTGAAGAAAGAAAAAAATAGACAACTTGAGCGGGATGCTCTCTTCAGGAAGACACATAACATTCATGTCTCTGGTTATAATGTGCCATCCCCACTTCAAAACTTTGATGAATTGAAATCAAGATATAATTGTCCGTCATATTTATTGCGCAATCTCGCAAAACTTGGATTTAGAGAACCAACACCAATCCAACGGCAGGCTATTCCAGTACTTTTACATGGTCGTGAATGCTTTGCTTGTGCCCCAACTGGTTCTGGAAAAACCTTTGCTTTTGTGTGTCCCATGCTTATGAAGCTCAAGGAACCTTCCAGAGATTGCATTCGGGCTGTTATCCTTTGTCACACCCGTGAATTATCTGCTCAAACATACCGAGAGTGCAAAAAGCTTGCTAAAGGGAAAAATTTTCGTATCAAGTTATTGACGAAACAACTTCTACGAAATGCAGATTTTTCGAAATTTCCATGTGACATACTTATATCCACACCACTTCGATTACGCATGGCTATCCGAAGGAAAAAGGTTGATCTCAGCAGAGTTGAGTATCTTGTCTTGGATGAATCCGATAAGTTATTTGAACCTGACTTGTTCAAGCAGATTGATTCTGTTATTAAAGCATGCTCGAATCCCTCAATAATACGCTCCCTGTTCAGTGCCACTTTACCTGATTTTGTTGAAGATAGAGCTCGAGAACTCATGCATGATGCTGTTCGGGTAATTGTTGGCAGGAAGAATACAGCTTCTGAAACAATAAAGCAAAAATTGGTGTTTACTGGAAGTGAAGAAGGAAAACTTCTGGCAATTCGTCAAAGTTTTGCAGAGAGTCTAAATCCTCCAGTTTTGGTCTTTCTCCAAAGCAAGGAACGAGCCAAGGAGCTGTATGGTGAACTTGCATTTGACAACATTAGAGTTGATGTCATCCATTCTGATTTGTCTCAAGAAGAGCGAGAAAATGCTATTGATAACTTCAGAGCTGGAAAGACATGGGTTTTGATTGCTACTGACGTGGTTGCCCGTGGCATGGATTTCAAAGCTGTCAACTGTGTGATCAATTATGATTTCCCAGATTCTGCTTCTGCATATATCCACAGAATTGGTCGTTCTGGCAGAGCTGGGAGGAGTGGAGAAGCGATTACATTTTACACCGAGGAAGACATTCCCTTCCTGCGGAATGTATCTAATCTTATGGCTTCATCAGGCTGCGAAGTTCCATCCTGGTTAATGGAGTTGCAAAAAAAGAAGTGGAGGAGACATCGGCCAAAAAGAGATTCAATCTCTACCTAA 1587 0.4197 MANDSLFAGIHFDRKKFGADIARFQKKENANDSVKIWSVTEDESEKTEDTVKERAPSVKKRKRKRNSREETVEGFSVFRSSAHEPQLELNDEVQPDDDESIRLKKEKNRQLERDALFRKTHNIHVSGYNVPSPLQNFDELKSRYNCPSYLLRNLAKLGFREPTPIQRQAIPVLLHGRECFACAPTGSGKTFAFVCPMLMKLKEPSRDCIRAVILCHTRELSAQTYRECKKLAKGKNFRIKLLTKQLLRNADFSKFPCDILISTPLRLRMAIRRKKVDLSRVEYLVLDESDKLFEPDLFKQIDSVIKACSNPSIIRSLFSATLPDFVEDRARELMHDAVRVIVGRKNTASETIKQKLVFTGSEEGKLLAIRQSFAESLNPPVLVFLQSKERAKELYGELAFDNIRVDVIHSDLSQEERENAIDNFRAGKTWVLIATDVVARGMDFKAVNCVINYDFPDSASAYIHRIGRSGRAGRSGEAITFYTEEDIPFLRNVSNLMASSGCEVPSWLMELQKKKWRRHRPKRDSIST* 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0877 528 Pfam DEAD/DEAH box helicase 163 327 IPR011545 GO:0003676|GO:0005524
Lja1g0877 528 Gene3D - 97 339 IPR027417 -
Lja1g0877 528 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 170 340 IPR014001 -
Lja1g0877 528 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 170 485 IPR027417 -
Lja1g0877 528 SMART helicmild6 392 473 IPR001650 -
Lja1g0877 528 MobiDBLite consensus disorder prediction 39 72 - -
Lja1g0877 528 CDD DEADc_DDX52 150 343 IPR044764 GO:0003724|GO:0005524|GO:0030490
Lja1g0877 528 SMART ultradead3 158 355 IPR014001 -
Lja1g0877 528 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 57 5 527 - -
Lja1g0877 528 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 5 527 - -
Lja1g0877 528 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 139 167 IPR014014 GO:0003724
Lja1g0877 528 Pfam Helicase conserved C-terminal domain 370 473 IPR001650 -
Lja1g0877 528 Gene3D - 340 517 IPR027417 -
Lja1g0877 528 CDD SF2_C_DEAD 352 482 - -
Lja1g0877 528 MobiDBLite consensus disorder prediction 39 56 - -
Lja1g0877 528 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 351 512 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0877 Lja-Chr1 8618150 8622964 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0877 133 511 Eukaryotic Initiation Factors Gene Family AT3G19760 31.234 7.66e-55 188
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0877 K14779 - gmx:100800969 858.596
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0877 1 8618150 8622964 Lja1g0877 1 8618150 8622964 ECH