Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0870 ATGGGGCATAGACATTTGTATAACACAACCCCATTGTTTGAGGGTGAGCCTGACCAGAATTGGAATCATATGCATACTGATCAACATTATGTGAACCTTGGTAGGACTAGCACTGCAGAGAATGGTTCCTATTTTTATCCTGTGGAAAATGTGTCCATAGATAGCACTTCTTTCCCCTCTCATTGGAACCCTGCAACAAGGTCAAATGGATATGCATCTTCAAGTCTCAACATTGAAGTACCTCCTCATCAATCAGATACATCAGGCGCTTCAAATGATCATTTTATACATTCGTCTAGTGCTGGAGCTTTCTTTGCAGTATCTAATAATTGTGTGCCTCAGCCGCCTGCGGCCAATTATGACAGACCACCATTTCAGGTTGATGGTGGTTTTATTGATCTTACGATGGGAAGTGGACGAGGGCCTCACAAGCGAAAGAGCCCTGGAATTCCATCAGTCTATGAGAGAGGCGGTTCAAGCAGATATTTCAATGCTGGGAGTTCAACTGATGTTCCTATATCTTCAGAATCGCGGCCCGAGAAGCCAAATATAGATTCTCAATATATGCCCTGGGATCATGTTCCTATGACATCCACAGTCAGAGGTGCAGGCCACTCAATAAAGGGTGAGAGTTCTTTGAGGAATGTGAGGAGCCGTTCTGCACTTGATTTGGAATCCAACCTTTCTAGGACCCATTTACCAAGTAATCATTCGCACAACTCCTACTCTACTATCCCACCAGTTGACCATTCTAGCATGATGGATCTTTCAGGTCAGATTTCTACCTCTTTGACAGGGGATTGGAGCCAAATGAACATATCTCCTGCTAATGGAAGGGTGTTATTACCAGATGCCGGTGCTTATGGTCTTGAGTCAAGTCACTTCCTTGCTGGAAGTGGTGCTACTGCTAGTAATGCTTCTGTTGATGTTGGGAGCTTCCATCATGAATTTGGTACAAGCAGAAATCCTACTGGTCCTCAAAGTTTTCATAATCTGACTCAGACTGCTAGGGGAATCCGAAGTAACTATTCTCAGAGATCAGCCCCAACTTTTAGGGCTTCTTCAAGCACGCACTTGGGACATGTGACACCATTGGATGATGGATTGCCCATGGTAGCTGAAAGTTACTCTTCTAGACATCAAAGGCCATTATCCAGCATTGGATGGCGGAACAGTGATCGAAATGGGAGGGCAAGAATTTCTAGTGAAAGATATCGATCATTGGCTAATGAGGCCGGTCTCCATGGTCGAATTTCCCCTGAGGGTTTCATGATTGTCGATCGCGCATCAATGTATGGTTCAAGGAATATGCTTGACCAGCACAGAGACATGAGGATGGACATAGATAACATGAGCTATGAGGAACTACTTGCACTTGGTGAGAGGATTGGCCATGTTAACACGGGATTATCCGAGGATTCGTTTTCCCAGTGTATGACAGAAACAATATATTGTTCATCTGAGCAAGGTCAAGACGAAGGAAGCTGTGTAATCTGTCTGGAAGAATACAAGAACATGGACGATGTTGGGACACTTAAAACTTGTGGACATGATTACCATGTGAACTGCATTAAGAAGTGGTTATCTATGAAGAAACTATGTCCTATCTGCAAAGCTTCTGTTATGCCCGAGGATAAGATGAACAAATAA 1650 0.4382 MGHRHLYNTTPLFEGEPDQNWNHMHTDQHYVNLGRTSTAENGSYFYPVENVSIDSTSFPSHWNPATRSNGYASSSLNIEVPPHQSDTSGASNDHFIHSSSAGAFFAVSNNCVPQPPAANYDRPPFQVDGGFIDLTMGSGRGPHKRKSPGIPSVYERGGSSRYFNAGSSTDVPISSESRPEKPNIDSQYMPWDHVPMTSTVRGAGHSIKGESSLRNVRSRSALDLESNLSRTHLPSNHSHNSYSTIPPVDHSSMMDLSGQISTSLTGDWSQMNISPANGRVLLPDAGAYGLESSHFLAGSGATASNASVDVGSFHHEFGTSRNPTGPQSFHNLTQTARGIRSNYSQRSAPTFRASSSTHLGHVTPLDDGLPMVAESYSSRHQRPLSSIGWRNSDRNGRARISSERYRSLANEAGLHGRISPEGFMIVDRASMYGSRNMLDQHRDMRMDIDNMSYEELLALGERIGHVNTGLSEDSFSQCMTETIYCSSEQGQDEGSCVICLEEYKNMDDVGTLKTCGHDYHVNCIKKWLSMKKLCPICKASVMPEDKMNK* 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0870 549 CDD RING-H2_TTC3 495 538 - -
Lja1g0870 549 MobiDBLite consensus disorder prediction 136 189 - -
Lja1g0870 549 SMART ring_2 496 537 IPR001841 -
Lja1g0870 549 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 461 543 IPR013083 -
Lja1g0870 549 SUPERFAMILY RING/U-box 485 543 - -
Lja1g0870 549 Pfam Ring finger domain 495 538 IPR001841 -
Lja1g0870 549 MobiDBLite consensus disorder prediction 161 182 - -
Lja1g0870 549 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 544 - -
Lja1g0870 549 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 1 544 IPR045191 GO:0061630
Lja1g0870 549 Coils Coil 548 549 - -
Lja1g0870 549 ProSiteProfiles Zinc finger RING-type profile. 496 538 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0870 Lja-Chr1 8554449 8556771 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0870 1 548 C3H Transcription Factor Family AT2G37150 40.360 3.37e-107 330
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0870 - - gmx:100803627 915.605
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0870 1 8554449 8556771 Lja1g0870 1 8554449 8556771 ECH