Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0868 ATGAGCGTCATCGACATTCTCACCAGAGTTGATTCCATTGTTAACAAGTACGACAAATACGACATCGATAAGCAAAAAGATTCCAATGTCTCCGGCGACGATCCCTTCGCCAAACTCTACGCCGCCGTCGACGCCGACATTGACGCCGCACTTCAGAAAGCAGAAACCGCTTCCAATGGGAAAAATAGGGCATCAACTGTAGCGATCAATGCTGAGATTCGTCGCACTAAGGCTAGGTTGCTGGATGAGGTGCCCAAATTGCAGAGGTTGGCTGTAAAAAAGGTAAAAGGGCTTTCGTCACAAGAATTTGCTGCCCGTAATGATTTAGTTCTTGCATTGCCGGAGAGGATCCAAGCGATTCCAGATGGGACCCCTGCTGCACCCAAACAAGCTGGAGGCTGGGCAGCTTCAGGCTCACGCCCTGAAATTAAATTTGATTCGAATGGGCGATTTGATGATGAATACTTCCAACAAACAGAAGAATCAAGTCAATTCAGGCAGGAGTATGAAATGCGTAAAATGAAACAGGATCAAGGTTTGGACGTGATCGCAGAAGGATTAGATACATTGAAAAACATGGCCCATGATATGAATGAGGAATTTGATAGACAAGTTCCACTGATGGATGAGATTGATACTAAGGTGGACAAGGCATCATCTGACCTTAAGAATACCAATGTTAGACTTAAACATACAGTGACCCAGCTTCGATCCAGTCGAAACTTCTGTATCGATATTGTTTTGTTGATTATCATTTTGGGAATTGCTGCCTATTTGTACAATGTGTTGAAGAAATGA 798 0.4398 MSVIDILTRVDSIVNKYDKYDIDKQKDSNVSGDDPFAKLYAAVDADIDAALQKAETASNGKNRASTVAINAEIRRTKARLLDEVPKLQRLAVKKVKGLSSQEFAARNDLVLALPERIQAIPDGTPAAPKQAGGWAASGSRPEIKFDSNGRFDDEYFQQTEESSQFRQEYEMRKMKQDQGLDVIAEGLDTLKNMAHDMNEEFDRQVPLMDEIDTKVDKASSDLKNTNVRLKHTVTQLRSSRNFCIDIVLLIIILGIAAYLYNVLKK* 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0868 265 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 170 232 IPR000727 -
Lja1g0868 265 SUPERFAMILY SNARE fusion complex 163 230 - -
Lja1g0868 265 Gene3D - 170 231 - -
Lja1g0868 265 CDD SNARE_Qc 175 231 - -
Lja1g0868 265 MobiDBLite consensus disorder prediction 122 148 - -
Lja1g0868 265 SMART tSNARE_6 165 232 IPR000727 -
Lja1g0868 265 PANTHER SYNTAXIN-73 1 261 - -
Lja1g0868 265 PANTHER SYNTAXIN 1 261 IPR045242 -
Lja1g0868 265 Pfam SNARE domain 207 256 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0868 Lja-Chr1 8535158 8537822 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0868 1 264 SNARE and Associated Proteins AT3G09740 75.188 2.89e-151 421
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0868 K08506 - gmx:100819272 439.499
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0868 1 8535158 8537822 Lja1g0868 1 8535158 8537822 ECH