Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0867 ATGGACAAAGATCCTAATTTGGAAATCCAACTTCCTCCTGGATTTAGATTCCATCCTTCTGACGAGGAGCTCATCGTTCATTATCTTCGAAATAAAGTGACTTCATGTCCACTTCCTGCTTCGTTCATAGCAGAAATTGAACTTTACAAGTATAATCCATGGGAGCTGCCAAGCAAAGCTTTGTTTGGGGAGGAAGAGTGGTATTTCTTTACTCCAAGGGACAGGAAATATCCCAAAGGAGTGAGGCCTAATAGAGCAGCTGGTTCAGGATACTGGAAAGCTACTGGGACTGACAAACCAATTCTCACTTCCTGTGGGATGAAAAGCATTGGAGTGAAGAAGGCCCTTGTGTTCTACAAGGGACGTCCACCAAAAGGATCTAAAACTGATTGGGTCATGCATGAGTACAGGTTGCATGATTCAATGATCTCAAATTCTAAGCAAAGAGGGTCTATGAGACTGGATGAGTGGGTGCTTTGCCGGGTTCGGCAAAAAATCAGCAGCCCAAGAAGCACTTGGGAAGAATCTAATGAACATAGCTATGAACCAGTAACAAGCAACTTTCAACAAATAAATGAGAGCTCTTATTCTGAACCAGTCAAAAACTCTGCGCAGAATGAATTTCCAATGCTGCCTTATATTTTGGCTTCTAAGACTGTTCTGCCTAATTCCATTGGTATTTCCTCAAGCTCAGGCTTTGGCAGTAATGGAAATGATGATATTAAACCATATGCTTCACTTCATGAAGACAGCTTAAGCATAATGGAAGCTAAGTTCTTAGCATCTGCAACCGAGTGCTTGCTTAATCCGCTAAAGAGAAAAGCCACTGAAGAAAATGAGTTGGACTTTTATGCTGTCAATAAAAAACTATGCAAAGAAGTTGATGACAGGGAGCAAAAACATGAGACAGATACTGCCATAGGCTATAACTTCAACTACTTCAACCAGTGGACTTCGATCATGCAACCACAATAG 975 0.4144 MDKDPNLEIQLPPGFRFHPSDEELIVHYLRNKVTSCPLPASFIAEIELYKYNPWELPSKALFGEEEWYFFTPRDRKYPKGVRPNRAAGSGYWKATGTDKPILTSCGMKSIGVKKALVFYKGRPPKGSKTDWVMHEYRLHDSMISNSKQRGSMRLDEWVLCRVRQKISSPRSTWEESNEHSYEPVTSNFQQINESSYSEPVKNSAQNEFPMLPYILASKTVLPNSIGISSSSGFGSNGNDDIKPYASLHEDSLSIMEAKFLASATECLLNPLKRKATEENELDFYAVNKKLCKEVDDREQKHETDTAIGYNFNYFNQWTSIMQPQ* 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0867 324 SUPERFAMILY NAC domain 9 165 IPR036093 GO:0003677|GO:0006355
Lja1g0867 324 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 2 294 - -
Lja1g0867 324 PANTHER NAC TRANSCRIPTION FACTOR 56 2 294 - -
Lja1g0867 324 Pfam No apical meristem (NAM) protein 12 138 IPR003441 GO:0003677|GO:0006355
Lja1g0867 324 ProSiteProfiles NAC domain profile. 11 165 IPR003441 GO:0003677|GO:0006355
Lja1g0867 324 Gene3D NAC domain 20 168 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0867 Lja-Chr1 8532227 8534314 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0867 10 174 NAC Transcription Factor Family AT1G61110 67.630 9.11e-83 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lja1g0867 NAM 1.7e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0867 - - lja:Lj1g3v4579400.1 662.144
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0867 1 8532227 8534314 Lja1g0867 1 8532227 8534314 ECH