Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0866 ATGTTCAATCCTATTGGCTTCTCCATGGATTCCAGGGGATTGCTCTACACCGTCTTCATACTCAATTTCGTTTTGGTCTGCCAACTCATTCTCCTTCAACCTCTCGTCTCCGCAGAAGGTGGAAAATCTGGAAATGCTGCTGAGTTGTTTGAGAGAGCATCACAAAGTATAAAAGTGAAACATTATACTGAGGCACTTGATGATCTAAATGCTGCGATAGAAGCAGATCCAACCCTTTCGGAAGCATACCTTTTCCGTGCATCAGTTCTTCGTCGGTCATGCAGATATGAACAATCTGAGAGGAGCTACAAAAAGTTTCTGGAGTTAAAACCTGGAGATTCCGCTGCAGAAAAGGAGCTTTCTCAGATGTTGCAGGCACAAAGTGCCCTAGAAACAGCTCAATCCCTCTATGAGTTGGGCAACTTCTCAAAATCTTTGGAATATATTGATAAAGTTGTTCTTGTTTTTTCTCCTGATTGCACTAAGGCTAAGCTTCTTAAAGTGAAGTTGTTGATAGGTGACAAAGATTATGAGGGTGCCATTGCAGAGTCTGGATTTATGCTCAAGGAAGATGAAAATAATTTAGAGGCATTATTGTTGCGAGGTCGTGCATATTACTATTTAGCTGATCATGATGTTGCCACGAGGCATTACCAAAAAGGTCTCCGTCTCGATCCAGAGCACAGTGAACTTAAAAAAGCATATTTTGGATTGAAAAACCTACTCAAAAAGAAAAAATCTGCTGAGGATAATGCTAGTAAGGGAAAGCTAAGGGTGGCTGTGGAGGAATTCAAGGCTGCACTTGCTGTTGACCCTAACCATCTTGCACATAATGTACATCTTCATCTTGGCTTATGTAAAGTGCTAGTCAGGCTTGGCAGAGGAAAAGACGCCTTGGACAGTTGTAGTGAAGCTCTTAAGATCGATGAGGAGCTTATTGAAGCTCTTGTTCAGAGGGGAGAAGCTAAACTCTTGACAGAGGATTGGGAGGGAGCTGTGGAGGACATGAAATCCGCTGCTGAAAAATCTCCTCAGGATATGAATATCCGTGAAGCATTAATGAGGGCCGAAAAAGCTTTAAAGATGAGCAAACGCAAGGATTACTACAAGATTTTGGGAATTTCAAAAACTTCTTCCGCTGCTGAGATAAAACGTGCCTACAAGAAACTTGCCTTACAATGGCACCCAGATAAGAATGTTGCCAATAGGGAAGAAGCAGAGGCTAAATTTCGAGAAATAGCCGCGGCATATGAGGTTCTAAGTGATGAAGACAAACGTACAAGATTTGACAGAGGGGAGGACCTTGAAGACATGGGAGGCATGGGTGGTGGTGGAGGTTTCAACCCCTTTGGTGGTGGGGGGCAGCAGTTCCACTTCACTTTTGACGGTGGCTTCCCCGGAGGAGGTGGGGGAGGGTTTCCGGGTGGTGGATTTGGAGGCGGCTACGAATTTCATTTTTGA 1461 0.4394 MFNPIGFSMDSRGLLYTVFILNFVLVCQLILLQPLVSAEGGKSGNAAELFERASQSIKVKHYTEALDDLNAAIEADPTLSEAYLFRASVLRRSCRYEQSERSYKKFLELKPGDSAAEKELSQMLQAQSALETAQSLYELGNFSKSLEYIDKVVLVFSPDCTKAKLLKVKLLIGDKDYEGAIAESGFMLKEDENNLEALLLRGRAYYYLADHDVATRHYQKGLRLDPEHSELKKAYFGLKNLLKKKKSAEDNASKGKLRVAVEEFKAALAVDPNHLAHNVHLHLGLCKVLVRLGRGKDALDSCSEALKIDEELIEALVQRGEAKLLTEDWEGAVEDMKSAAEKSPQDMNIREALMRAEKALKMSKRKDYYKILGISKTSSAAEIKRAYKKLALQWHPDKNVANREEAEAKFREIAAAYEVLSDEDKRTRFDRGEDLEDMGGMGGGGGFNPFGGGGQQFHFTFDGGFPGGGGGGFPGGGFGGGYEFHF* 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0866 486 Coils Coil 238 258 - -
Lja1g0866 486 Coils Coil 403 423 - -
Lja1g0866 486 Gene3D DnaJ domain 365 473 IPR036869 -
Lja1g0866 486 ProSiteProfiles dnaJ domain profile. 367 433 IPR001623 -
Lja1g0866 486 ProSiteProfiles TPR repeat profile. 80 113 IPR019734 GO:0005515
Lja1g0866 486 ProSiteProfiles TPR repeat profile. 195 228 IPR019734 GO:0005515
Lja1g0866 486 SUPERFAMILY TPR-like 50 362 IPR011990 GO:0005515
Lja1g0866 486 SMART dnaj_3 366 425 IPR001623 -
Lja1g0866 486 Pfam DnaJ domain 367 430 IPR001623 -
Lja1g0866 486 Gene3D Tetratricopeptide repeat domain 40 364 IPR011990 GO:0005515
Lja1g0866 486 PRINTS DnaJ domain signature 369 387 IPR001623 -
Lja1g0866 486 PRINTS DnaJ domain signature 405 425 IPR001623 -
Lja1g0866 486 PRINTS DnaJ domain signature 387 402 IPR001623 -
Lja1g0866 486 PRINTS DnaJ domain signature 425 444 IPR001623 -
Lja1g0866 486 ProSitePatterns Nt-dnaJ domain signature. 410 429 IPR018253 -
Lja1g0866 486 Pfam Tetratricopeptide repeat 60 114 - -
Lja1g0866 486 PANTHER DNAJ PROTEIN P58IPK HOMOLOG 10 486 IPR044620 -
Lja1g0866 486 SUPERFAMILY Chaperone J-domain 360 471 IPR036869 -
Lja1g0866 486 SMART tpr_5 313 346 IPR019734 GO:0005515
Lja1g0866 486 SMART tpr_5 195 228 IPR019734 GO:0005515
Lja1g0866 486 SMART tpr_5 46 79 IPR019734 GO:0005515
Lja1g0866 486 SMART tpr_5 80 113 IPR019734 GO:0005515
Lja1g0866 486 SMART tpr_5 126 159 IPR019734 GO:0005515
Lja1g0866 486 SMART tpr_5 279 312 IPR019734 GO:0005515
Lja1g0866 486 CDD DnaJ 367 422 IPR001623 -
Lja1g0866 486 Pfam Tetratricopeptide repeat 196 228 IPR013105 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0866 Lja-Chr1 8520678 8525246 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0866 363 430 C2H2 Transcription Factor Family AT1G74250 47.222 2.51e-11 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0866 K09523 - gmx:100804685 754.977
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0866 1 8520678 8525246 Lja1g0866 1 8520678 8525246 ECH