Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0862 ATGAAGAATCCTTGTTCATTTTCTAGTTGTTTCTCAGCACCGGTCAAAGAACAAATTACCAATCACGAAAAGTTAGAGGAAGATAATGATGGAAGCTTTCGCATATTCACTTATAGCGAATTGAAATCTGCCACCCGTGGTTTTCACTACTCGGAAAAGGTTGGAGAAGGAGGCTTTGGTTCTGTCTACAAGCTTAGAGATGGCACTTTGGTGGCTGTGAAAGTGATTTCAATTGAGCTGGAATCGTTGCGAGGAGAGAGGGAGTTCATAGCAGAATTGGCTACACTAGCAAACATCAAGCATCAAAATTTAGTCCTTCTAAGGGGGTGTTGTGTCCAAGGAGCCCACAGATATTTAGTCTATGAGTACATGGAAAACAACAGCCTTCGCCACACTTTCTTAGGTTCAGAGCATAACAAGGTGAGATTTAGCTGGGAAGTAAGGAGGGATGTATCCATAGGTGTGGCCAAGGTGCTTGCCTTTCTCCATGAGGAACTTAAGCCTCATATTGTCCATAGGGATATCAAAGCAAGCAATATCCTTCTTGATCAAAATTTGACACCAAAAGTTTCAGACTTTGGTTTGGCAAAGCTACTAAAAGATGAAAAATCCTACATAAGTACTCGAGTTGCAGGGACATTGGGTTATCTTGCTCCAGAGTATGCCAGTTCTGGACAGCTAACACGAAAATCAGATGTTTATAGCTTTGGAGTACTACTCTTAGAAATTGTCAGTGGCAGAGAAGTAGTAGATTATCATCAGGATATGGAACAATTTTTAGTAGAGCAGGCTTGGGAAGCGTATGAAGGTAATGATCTATTGAGCATGGTGGATCCAGTGTTGAATATGAATATTCCGGTTGAAGAAGCAAAACGATTCCTAGTGGTTGGACTGCGTTGTGTGCAAGAAACCGCCAAGCTTCGGCCACGAATGTCTGAGGTTGTAGAGATGCTGACCAACAGTATTGATATGGAAGAAGACGGTCATAATATTTCAAAACCAGGATTTGTCAGCAACATCAGAAAGAGGCAGCAAGCGCAAACATTAGAAGAATCAAGTTCTGCTACAGCAAATTTTTCAAGCTCCATGTGGAGTACTACCAATCTCGCACGTTAG 1116 0.4185 MKNPCSFSSCFSAPVKEQITNHEKLEEDNDGSFRIFTYSELKSATRGFHYSEKVGEGGFGSVYKLRDGTLVAVKVISIELESLRGEREFIAELATLANIKHQNLVLLRGCCVQGAHRYLVYEYMENNSLRHTFLGSEHNKVRFSWEVRRDVSIGVAKVLAFLHEELKPHIVHRDIKASNILLDQNLTPKVSDFGLAKLLKDEKSYISTRVAGTLGYLAPEYASSGQLTRKSDVYSFGVLLLEIVSGREVVDYHQDMEQFLVEQAWEAYEGNDLLSMVDPVLNMNIPVEEAKRFLVVGLRCVQETAKLRPRMSEVVEMLTNSIDMEEDGHNISKPGFVSNIRKRQQAQTLEESSSATANFSSSMWSTTNLAR* 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0862 371 CDD STKc_IRAK 54 320 - -
Lja1g0862 371 ProSitePatterns Protein kinases ATP-binding region signature. 54 74 IPR017441 GO:0005524
Lja1g0862 371 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 7 361 - -
Lja1g0862 371 ProSiteProfiles Protein kinase domain profile. 48 322 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g0862 371 Pfam Protein kinase domain 48 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g0862 371 SUPERFAMILY Protein kinase-like (PK-like) 30 328 IPR011009 -
Lja1g0862 371 Gene3D Phosphorylase Kinase; domain 1 18 123 - -
Lja1g0862 371 SMART serkin_6 48 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g0862 371 ProSitePatterns Serine/Threonine protein kinases active-site signature. 170 182 IPR008271 GO:0004672|GO:0006468
Lja1g0862 371 Gene3D Transferase(Phosphotransferase) domain 1 124 332 - -
Lja1g0862 371 PANTHER RECEPTOR-LIKE KINASE 7 361 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0862 Lja-Chr1 8487672 8490217 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0862 36 361 Receptor kinase-like Gene Family AT1G56120 47.273 2.81e-91 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Lja1g0862 Pkinase 9e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0862 - - gmx:100785251 504.212
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0862 1 8487672 8490217 Lja1g0862 1 8487672 8490217 ECH