Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0860 ATGGCGAAAGACATCGAAACCGAAGCACCGCGAGGTGATCAGTTGGCACACAAGGACTACCATGACCCACCACCAGCACCGCTCTTCGACACCACCGAGCTCACCAAGTGGTCCTTCTACAGAGCCCTCATCGCCGAGTTCGTCGCCACCCTGCTCTTCCTCTACATCACCGTCCTCACCGTCATCGGCTACAGCAGCCAAACCGACCCCGCTAACACCACCGACCCTTGCGGCGGCGTTGGCATCCTCGGCATCGCTTGGGCCTTCGGCGGCATGATTTTCATCCTCGTTTACTGCACCGCCGGCATCTCAGGGGGTCACATAAACCCGGCGGTGACGTTCGGTTTGTTCCTGGCGAGGAAGGTTTCACTGGTCAGAGCTTTGTTCTACATGGTGGCTCAGTGTTTGGGAGCCATAAGCGGTGTTGGGTTGGTGAAGGCTTTTCAGAAAAGCTACTACAACAGGTACCATGGCGGTGCAAACATGCTTGCTGATGGCTACTCCAAGGGAACTGGTTTGGGCGCTGAGATTATCGGCACCTTTGTCCTTGTCTACACCGTCTTCTCCGCCACCGATCCCAAGAGAAACGCCAGAGATTCCCATGTTCCTGTTTTGGCACCTCTTCCAATTGGGTTTGCAGTGTTCATGGTTCACTTGGCCACCATCCCCATCACTGGAACCGGAATCAACCCTGCTAGAAGCTTCGGAGCTGCTGTCATATACAACAACGAGAAGGCATGGGATGACCAGTGGATCTTCTGGGTGGGACCTTTCATTGGTGCTACTATTGCTGCAATCTACCACCAGTACGTGTTGAGAGCTCAAGCGGCGAAGGCTCTAGGTTCTTTTAGGAGCTCCGGCCACCTGTAA 870 0.5494 MAKDIETEAPRGDQLAHKDYHDPPPAPLFDTTELTKWSFYRALIAEFVATLLFLYITVLTVIGYSSQTDPANTTDPCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLVRALFYMVAQCLGAISGVGLVKAFQKSYYNRYHGGANMLADGYSKGTGLGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNEKAWDDQWIFWVGPFIGATIAAIYHQYVLRAQAAKALGSFRSSGHL* 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0860 289 MobiDBLite consensus disorder prediction 1 24 - -
Lja1g0860 289 PANTHER AQUAPORIN PIP2-4-RELATED 1 286 - -
Lja1g0860 289 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 1 286 IPR034294 -
Lja1g0860 289 SUPERFAMILY Aquaporin-like 33 273 IPR023271 -
Lja1g0860 289 Gene3D Glycerol uptake facilitator protein. 26 288 IPR023271 -
Lja1g0860 289 CDD MIP 41 271 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja1g0860 289 PRINTS Major intrinsic protein family signature 41 60 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja1g0860 289 PRINTS Major intrinsic protein family signature 89 113 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja1g0860 289 PRINTS Major intrinsic protein family signature 126 145 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja1g0860 289 PRINTS Major intrinsic protein family signature 175 193 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja1g0860 289 PRINTS Major intrinsic protein family signature 211 233 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja1g0860 289 PRINTS Major intrinsic protein family signature 251 271 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja1g0860 289 TIGRFAM MIP: MIP family channel proteins 45 267 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja1g0860 289 Pfam Major intrinsic protein 33 268 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja1g0860 289 ProSitePatterns MIP family signature. 107 115 IPR022357 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0860 Lja-Chr1 8479992 8481585 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0860 1 289 Major Intrinsic Protein MIP AT2G37170 81.315 4.68e-171 474
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0860 K09872 - rcu:8284532 509.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g0874 5 8410595 8413578 Lja1g0860 1 8479992 8481585 ECH
Lja1g0860 1 8479992 8481585 Lja5g0874 5 8410595 8413578 ECH
Lja1g0860 1 8479992 8481585 Lja1g0860 1 8479992 8481585 ECH
Lja1g0860 1 8479992 8481585 Lja3g0838 3 8511872 8515271 ECH