Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0858 ATGATGGTGAGTACAGAGTCAAAGGAGAAATTGAAAGAGGTGGTGGAGAGGTGTTTAGATCCTCAGCTATGGCATGCTTGTGCTGGAGGGATGGTGCAAATGCCACAGGTGAATGCTAAGGTCTTCTACTTCCCTCAGGGTCACGCAGAACATGCATGTGAGCCTGTGGATTTCAGAAGTTACAACAAACTTCCATCTTGCATTCAATGCAGAGTCACAGGTATCAAATACATGGCTGATCCTGAAACAGATGAGGTTTGTGCAAGAATTAGGCTTGTTCCTCTTCACAGCAATGAGGTTGATTTTGATGATGATGGTGTTGGAGGGGGAGTCAATGAAACCAAGGATAACAAACCCCCTTCTTTTGCAAAAACATTGACACAATCTGATGCCAACAATGGCGGTGGTTTTTCTGTTCCTAGGTATTGTGCAGAGACAATTTTCCCTCCTTTGGACTATTCAGCTGATCCTCCTGTTCAGAACATCTTGGCTAAAGATGTTCATGGTGAGATATGGAAATTCAGACACATTTATAGGGGCACGCCGAGGCGGCATCTTTTGACTACAGGGTGGAGCACTTTTGTCAATCACAAGAAGCTTATTGCAGGGGACTCAATTGTGTTTCTGAGAGCAGAGAATGGAGATCTTTGTGTTGGAATTCGGCGCGCTAAAAGGGGTGGTAGTGGTGGTGGACCGGATCCTTCATCAGGCTGGAATTCCGCTGGTGGAACCGGATTTCACCCTTTATCTTATGCAGGATTTGCAGACAGTAACCAACTCCTGAGAAACGGTCATGGTAATGGCAATGGATTGAGCCCAACGAGTGCGAGTTTGATGTGTAGGGGGAAGGTGAGGGCACAAGCAGTGATTGAGGCTGCTACACTTGCTGCTAATATGCAGCCATTTGAGGTGGTTTACTATCCTCGGGCAAGTACTCCGGAGTTTTGTGTTAAGGCCTCTTTGGTTAGAGCAGCAATGCAGGTTAGGTGGTGTCCTGGAATGAGGTTCAAGATGCCCTTTGAAACCGAGGACTCCTCGCGGATTAGTTGGTTTATGGGAACTGTGTCCTCTGTTCAGGTTGCTGATCCAAGATGGTCAGACTCTCCTTGGAGACTTCTACAGGTTGCATGGGATGAACCAGATTTACTTCAAAATGTTAAAAGGGTGAGCCCTTGGCTGGTTGAAATCGTGTCGAACATGCCTAACATCCACCTTTCCCCTTTCACGCCACCGCGAAAGAAAATGAGATTGCCTCAACACCCAGATTTCCCCCTCGATGGCCAGATTTCAGTGCCAACATTTCCCGGCAACCACCTTCTAGGTCCCGGAACTTCCTTCGATCGTTTATACGAAAATAGTCCTGCTGGCATGCAGGGAGCCAGGCATGCTCATTATGGTATATCCTTATCAGATCTCCACCTCAGTAAACTGCAGTCAGGTCTATTTTCATCTAATTTCACTCAATTTGATCATATTCATCATGCTGCTGCTGCTACACCAATGAGGGTCCCCAACATTAACCCAACATTGCAAAAACCCAGCACTAGTGAAAATATCTCTTACTTACTATCCATGACAACAACAACAAACTCTACTCAGTCTAAGAAACCTGATGATGATGATGTGAAGCCGCCTCGACTTGTGCTTTTTGGCCAAACGATTCTCACAGAGCAACAAATCTCTCTGAGTTCATCCGCTGACAACACAGTTTCCCCGGTTCTTACTGGAAACAACAGTTCATCGGATGGAAATGCAGATAAAAAGACTAATTTTTCTAATGGTTTTGGATCTGCTCTTGATCGGCAAGATAGTTTGCCTAGTTTGGAGACAGGTCACTGTAAAGTTTTTATGGAATCAGAAGATGTAGGAAGGACCATGAACCTCACATTACTCAATTCTTATGATGAACTGTACAAAAAACTAGCTGATATGTTTGGGATACAAAAATCTGGGGTGTTGAGTCATGTGCTCTACTGTGATAAAACAGGAGCAGTTAAACACATTGGAGATGAAGCATTCAGTGACTTCACCAAAACAGCTAGGAGGTTGACCATTCTAATGGATTCCAGCAGCGACAATGGGAGAGTTTAG 2091 0.4505 MMVSTESKEKLKEVVERCLDPQLWHACAGGMVQMPQVNAKVFYFPQGHAEHACEPVDFRSYNKLPSCIQCRVTGIKYMADPETDEVCARIRLVPLHSNEVDFDDDGVGGGVNETKDNKPPSFAKTLTQSDANNGGGFSVPRYCAETIFPPLDYSADPPVQNILAKDVHGEIWKFRHIYRGTPRRHLLTTGWSTFVNHKKLIAGDSIVFLRAENGDLCVGIRRAKRGGSGGGPDPSSGWNSAGGTGFHPLSYAGFADSNQLLRNGHGNGNGLSPTSASLMCRGKVRAQAVIEAATLAANMQPFEVVYYPRASTPEFCVKASLVRAAMQVRWCPGMRFKMPFETEDSSRISWFMGTVSSVQVADPRWSDSPWRLLQVAWDEPDLLQNVKRVSPWLVEIVSNMPNIHLSPFTPPRKKMRLPQHPDFPLDGQISVPTFPGNHLLGPGTSFDRLYENSPAGMQGARHAHYGISLSDLHLSKLQSGLFSSNFTQFDHIHHAAAATPMRVPNINPTLQKPSTSENISYLLSMTTTTNSTQSKKPDDDDVKPPRLVLFGQTILTEQQISLSSSADNTVSPVLTGNNSSSDGNADKKTNFSNGFGSALDRQDSLPSLETGHCKVFMESEDVGRTMNLTLLNSYDELYKKLADMFGIQKSGVLSHVLYCDKTGAVKHIGDEAFSDFTKTARRLTILMDSSSDNGRV* 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0858 696 Gene3D - 120 224 IPR015300 -
Lja1g0858 696 Pfam B3 DNA binding domain 122 223 IPR003340 GO:0003677
Lja1g0858 696 SUPERFAMILY DNA-binding pseudobarrel domain 117 225 IPR015300 -
Lja1g0858 696 MobiDBLite consensus disorder prediction 566 598 - -
Lja1g0858 696 ProSiteProfiles PB1 domain profile. 610 693 IPR000270 GO:0005515
Lja1g0858 696 PANTHER AUXIN RESPONSE FACTOR 6 687 - -
Lja1g0858 696 Gene3D - 608 693 - -
Lja1g0858 696 ProSiteProfiles B3 DNA-binding domain profile. 122 224 IPR003340 GO:0003677
Lja1g0858 696 Pfam Auxin response factor 292 374 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Lja1g0858 696 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 6 687 IPR044835 GO:0003677|GO:0006355|GO:0009725
Lja1g0858 696 Gene3D - 329 402 - -
Lja1g0858 696 CDD B3_DNA 120 222 IPR003340 GO:0003677
Lja1g0858 696 SMART B3_2 122 224 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0858 Lja-Chr1 8432204 8436441 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0858 11 693 B3 DNA Binding Superfamily AT4G30080 56.854 0.0 727
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Lja1g0858 B3 2.6e-20 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0858 - - mnt:21407127 959.903
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g0881 5 8489197 8492954 Lja1g0858 1 8432204 8436441 ECH
Lja1g0858 1 8432204 8436441 Lja5g0881 5 8489197 8492954 ECH
Lja1g0858 1 8432204 8436441 Lja1g0858 1 8432204 8436441 ECH
Lja5g2666 5 53206624 53209573 Lja1g0858 1 8432204 8436441 ECH
Lja1g0858 1 8432204 8436441 Lja3g0846 3 8599761 8603774 ECH