Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0852 ATGGCACCAACCACCAACAGCAACCACGAGAGCCTAAATAGTTCCATCTTCTGCACTGCTGCTAAAGCAGGCAGTGATCCCTTGAGTTGGGGTGTAGCAGCAGATTCGATGAAGGGGAGCCACCTGGATGAGGTCAAGCGCATGGTGGCTGAGTACAGGAAGCCTGTGGTCAAGCTAGGCGGGGAAACTCTGACAATAGCTCAGGTAGCTGCCATTGCAGCAAACGACCAAGGCGTAAGCGTTGAGCTGTGCGAATCAGCTAGAGCTGGCGTTAAGGCGAGCAGTGACTGGGTCATGAACAGCATGAACAATGGCACTGACAGTTACGGTGTCACCACCGGCTTTGGCGCCACCTCCCACCGCAGAACCAAAAATGGCAATGCTTTGCAGCTAGAACTCATTAGGTTTCTGAATGCTGGAATATTTGGCAATGGTACAGAAACAAGTCACACACTACCACAGCCTGCAACTAGAGCAGCGATGCTAGTGAGGATCAACACTCTTCTCCAAGGATACTCAGGCATTAGGTTTGAAATTCTAGAAGCTATCACCAAGCTCATCAACAACAACATCACCCCATGTTTACCACTTCGTGGTACTGTCACGGCCTCCGGTGATCTGGTCCCTCTTTCTTACATTGCCGGCTTGCTTACTGGCCGACAAAACTCCAAAGCTGTTGGACCATCTGGCAAGGTACTTAATGCCAAGGAAGCTTTCCAATCAGCTGGCATAGACTCAGGGTTCTTTGAATTGCAGCCCAAGGAAGGGCTTGCTCTTGTTAATGGCACTGCTGTTGGTTCTGGGTTAGCTTCTATTGTTCTCTTTGATGCGAACATTTTGGCTATACTGTCTGAAGTTTTATCGGCTATTTTTGCCGAAGTGATGCAAGGGAAACCTGAATTTACCGACCATTTGACACATAAGTTAAAGCACCACCCTGGCCAAATTGAGGCTGCTGCTATCATGGAGCACATTTTGGATGGAAGTTCCTACATGAAAGCTGCAAAGAAGTTGCATGAGGTGGATCCTTTGCAAAAGCCAAAACAAGATCGATATGCACTTAGAACTTCACCTCAGTGGCTTGGCCCTCTGATTGAAGTGATTCGATTCTCAACAAAGTCGATCGAGAGAGAGATTAATTCTGTGAACGACAACCCTTTGATTGATGTTTCCAGAAACAAGGCCTTGCACGGTGGTAATTTCCAAGGGACCCCTATTGGAGTTTCCATGGACAACACACGTCTGGCCCTTGCAGCAATTGGAAAACTCATGTTTGCTCAGTTCACTGAGCTTGTGGATGACCACTACAACAATGGCTTACCTTCAAATCTCACTGCTAGTAGAAATCCCAGCTTGGATTACGGTCTTAAGGGAGCTGAAATTGCAATGGCTTCTTATTGCTCTGAACTCCAATATCTTGCAAATCCAGTCACAACTCATGTCCAAAGTGCTGAGCAACACAACCAAGACGTGAACTCTTTGGGTTTGATTTCTTCTAGAAAAACCAACGAAGCCGTTGAGATCCTTAAGCTCATGTCTTCCACATTCTTGATTGCACTTTGTCAAGCAATTGACTTGAGGCATTTGGAGGAGAACTTGAAATACTCAGTGAAGAGCACTGTAAGTCAAGTTGCCAAGAGGACTCTTACCACAGGTGTCAACGGAGAACTCCATCCTTCCAGGTTTTGTGAAAAAGATTTGCTGAAGGTGGTCGATAGGGAAGCTGTATTTGCCTACATTGATGACCCTTGCCTTGCTACTTACCCATTGATGCAGAAACTGAGGCAAGTGCTTGTGGATCATGCTTTAGTAAATGGAGAAAACGAGAAGGACTCAAAGACATCAATCTTTCAAAAGATTGCAACTTTTGAGGATGAGTTGAAGAGTCTCTTGCCAAAGGAGGTTGAAAGTGCAAGGGCTGCATATGAGAGTGGCAATCCAACAATTTCAAACAAGATTAACGAATGCAGGTCTTATCCATTGTACAAGTTTGTGAGGGAGGAGCTGGGAACTGAGTTGCTAACTGGTGAAAAGTCCAGGTCACCAGGCGAGGAGTGTGACAAATTGTTCACAGCAATATGCCAGGGTAAAATTATTGATCCTCTTTTGGAATGCCTTGGGGAGTGGAACGGTGCCCCTCTTCCAATATGCTAA 2154 0.4619 MAPTTNSNHESLNSSIFCTAAKAGSDPLSWGVAADSMKGSHLDEVKRMVAEYRKPVVKLGGETLTIAQVAAIAANDQGVSVELCESARAGVKASSDWVMNSMNNGTDSYGVTTGFGATSHRRTKNGNALQLELIRFLNAGIFGNGTETSHTLPQPATRAAMLVRINTLLQGYSGIRFEILEAITKLINNNITPCLPLRGTVTASGDLVPLSYIAGLLTGRQNSKAVGPSGKVLNAKEAFQSAGIDSGFFELQPKEGLALVNGTAVGSGLASIVLFDANILAILSEVLSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYMKAAKKLHEVDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLALAAIGKLMFAQFTELVDDHYNNGLPSNLTASRNPSLDYGLKGAEIAMASYCSELQYLANPVTTHVQSAEQHNQDVNSLGLISSRKTNEAVEILKLMSSTFLIALCQAIDLRHLEENLKYSVKSTVSQVAKRTLTTGVNGELHPSRFCEKDLLKVVDREAVFAYIDDPCLATYPLMQKLRQVLVDHALVNGENEKDSKTSIFQKIATFEDELKSLLPKEVESARAAYESGNPTISNKINECRSYPLYKFVREELGTELLTGEKSRSPGEECDKLFTAICQGKIIDPLLECLGEWNGAPLPIC* 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0852 717 CDD PAL-HAL 62 527 IPR001106 -
Lja1g0852 717 Pfam Aromatic amino acid lyase 64 531 IPR001106 -
Lja1g0852 717 PANTHER HISTIDINE AMMONIA-LYASE 21 717 IPR001106 -
Lja1g0852 717 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 199 215 IPR022313 GO:0016841
Lja1g0852 717 Gene3D - 530 651 IPR023144 -
Lja1g0852 717 Gene3D - 17 263 IPR024083 -
Lja1g0852 717 Gene3D Fumarase/aspartase (Central domain) 264 712 - -
Lja1g0852 717 PANTHER PHENYLALANINE AMMONIA-LYASE 1-LIKE 21 717 - -
Lja1g0852 717 TIGRFAM phe_am_lyase: phenylalanine ammonia-lyase 26 706 IPR005922 GO:0005737|GO:0006559|GO:0016841
Lja1g0852 717 SUPERFAMILY L-aspartase-like 26 717 IPR008948 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0852 Lja-Chr1 8292457 8294782 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0852 26 717 Monolignol Biosynthesis Gene Families AT2G37040 83.092 0.0 1226
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0852 K10775 - gmx:100811101 1251.11