Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0851 ATGGCCCCAAACACCAACGCCACGCAAAACGGTTCCATCTTCTGCAACACTGTCAAAACCGCCGCCACTGATCCGTTAAGTTGGGGGGTCGCGGCGGAGTCCATGAAAGGGAGCCACCTCGACGAGGTCAAGCGCATGGTGGCGGAGTACCGCAAGGCGGTGGTCAAGCTTGGCGGAGAGACTCTCACAATAGCTCAGGTAGCTGCCATCGCCGCAAACCACCAAGGCGTGAGCGTTGAGCTTTGTGAATCAGCTAGAGCTGGCGTTAAGGCGAGCAGTGACTGGGTCATGAACAGCATGAACAACGGCACTGACAGTTACGGTGTCACCACCGGCTTCGGCGCCACCTCCCACCGCAGAACCAAAAATGGCAATGCTCTGCAGCTAGAACTCATCAGGTTTTTGAATGCTGGAATATTTGGCAATGGTACTGAGTCAACTCACACCCTGCCACAGCCTGCAACTAGAGCAGCCATGCTAGTGAGGATCAACACTCTTCTCCAAGGATACTCAGGCATTAGATTTGAAATCCTTGAAGCAATCACCAAGCTCATCAACAACAACATCACCCCATGTTTACCACTTCGCGGTACCGTCACGGCCTCTGGTGATTTAGTCCCTCTTTCTTACATTGCCGGCTTGCTTACCGGCCGACCGAACTCCAAAGCTGTTGGACCATCCGGCGAGGTTCTTAATGCTAAGAATGCTTTCCAATTGGCTGGCATAGACTCTGGTTTCTTTGAATTGCAGCCTAAGGAAGGGCTTGCCCTTGTTAATGGTACTGCTGTTGGTTCTGGGTTAGCTTCGATTGTTCTATTTGATGCGAACGTATTGGCTATACTGGCTGAAGTTCTATCAGCTATTTTCGCCGAAGTGATGCAAGGGAAACCTGAATTCACTGACCACTTGACTCATAAGCTGAAGCATCACCCTGGACAAATTGAGGCTGCTGCTATCATGGAGCACATTTTGGATGGGAGTTCCTACATGAAAGCAGCAAAGAAGTTGCACGAGGTGGATCCTTTGCAAAAGCCAAAACAAGATCGATATGCACTTAGAACTTCACCTCAGTGGCTTGGTCCTCTGATTGAAGTGATTCGGTTCTCAACAAAGTCGATCGAGAGAGAGATTAATTCTGTGAACGACAACCCTTTGATTGATGTTTCCAGAAACAAAGCCTTGCATGGTGGTAATTTCCAAGGAACCCCAATCGGAGTTTCTATGGACAACACACGCCTGGCTCTTGCAGCGATTGGCAAACTCATGTTTGCTCAATTCACTGAGCTTGTGGATGATCATTACAACAACGGGTTGCCTTCAAATCTCACAGCAAGTAGAAATCCCAGCTTGGATTATGGTCTAAAGGGAGCTGAAATTGCCATGGCTTCTTATTGCTCCGAGCTCCAATATCTTGCGAATCCAGTCACAACTCATGTCCAAAGTGCTGAGCAACATAACCAAGATGTGAATTCCTTGGGTTTGATTTCTTCTAGAAAAACAAATGAAGCCATTGAAATCCTTAAGCTCATGTCTTCCACATTCTTGATCGCACTTTGCCAAGCAATTGACTTAAGGCATTTAGAGGAGAACTTGAAGTACTCGGTGAAGAGCACTGTAAGTCAAGTTGTGAAGAGGACTCTTACCACAGGTGTCAACGGAGAACTCCATCCTTCTAGATTTTGTGAAAAAGATTTGCTGAAGGTGGTCGATAGGGAAACTCTATTTTCCTATATTGATGATCCTTGCAGCGCTACATACCCGTTGATGCAAAAACTAAGGCAAGTGCTTGTCGATCACGCACTAGTAAACGGAGAAAACGAGAAGGACTCGAAGACATCAATCTTTCAAAAGATTGCAACTTTTGAGGATGAGTTGAAGAGTCTCTTGCCAAAGGAGGTTGAAAGTGCAAGGGCTGCATATGAGAGTGGAAATCCAACAATTCCAAACAAGATCAATGAATGCAGATCTTACCCGCTATACAAGTTTGTGAGAGAGGAGTTGGGAACCGAGTTGCTAACCGGTGAAAAGACCAGATCACCAGGCGAGGAGTGTGACAAGTTGTTCACAGCAATATGCCAGGGTAAAATTATTGATCCTCTTTTGGAATGCCTTGGGGAGTGGAACGGTGCCCCTCTTCCAATTTGTTAA 2148 0.4697 MAPNTNATQNGSIFCNTVKTAATDPLSWGVAAESMKGSHLDEVKRMVAEYRKAVVKLGGETLTIAQVAAIAANHQGVSVELCESARAGVKASSDWVMNSMNNGTDSYGVTTGFGATSHRRTKNGNALQLELIRFLNAGIFGNGTESTHTLPQPATRAAMLVRINTLLQGYSGIRFEILEAITKLINNNITPCLPLRGTVTASGDLVPLSYIAGLLTGRPNSKAVGPSGEVLNAKNAFQLAGIDSGFFELQPKEGLALVNGTAVGSGLASIVLFDANVLAILAEVLSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYMKAAKKLHEVDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLALAAIGKLMFAQFTELVDDHYNNGLPSNLTASRNPSLDYGLKGAEIAMASYCSELQYLANPVTTHVQSAEQHNQDVNSLGLISSRKTNEAIEILKLMSSTFLIALCQAIDLRHLEENLKYSVKSTVSQVVKRTLTTGVNGELHPSRFCEKDLLKVVDRETLFSYIDDPCSATYPLMQKLRQVLVDHALVNGENEKDSKTSIFQKIATFEDELKSLLPKEVESARAAYESGNPTIPNKINECRSYPLYKFVREELGTELLTGEKTRSPGEECDKLFTAICQGKIIDPLLECLGEWNGAPLPIC* 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0851 715 SUPERFAMILY L-aspartase-like 24 715 IPR008948 GO:0003824
Lja1g0851 715 TIGRFAM phe_am_lyase: phenylalanine ammonia-lyase 24 704 IPR005922 GO:0005737|GO:0006559|GO:0016841
Lja1g0851 715 PANTHER PHENYLALANINE AMMONIA-LYASE 1-LIKE 16 715 - -
Lja1g0851 715 Gene3D - 528 649 IPR023144 -
Lja1g0851 715 CDD PAL-HAL 60 525 IPR001106 -
Lja1g0851 715 Pfam Aromatic amino acid lyase 62 529 IPR001106 -
Lja1g0851 715 Gene3D Fumarase/aspartase (Central domain) 262 710 - -
Lja1g0851 715 Gene3D - 15 261 IPR024083 -
Lja1g0851 715 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 197 213 IPR022313 GO:0016841
Lja1g0851 715 PANTHER HISTIDINE AMMONIA-LYASE 16 715 IPR001106 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0851 Lja-Chr1 8286825 8318153 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0851 11 715 Monolignol Biosynthesis Gene Families AT2G37040 82.128 0.0 1232
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0851 K10775 - gmx:100787902 1257.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0851 1 8286825 8318153 Lja5g0891 5 8627176 8633595 ECH
Lja1g0851 1 8286825 8318153 Lja1g0850 1 8282377 8290127 ECH
Lja1g0851 1 8286825 8318153 Lja1g0851 1 8286825 8318153 ECH
Lja1g0851 1 8286825 8318153 Lja5g2657 5 53036812 53041051 PCT