Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0850 ATGGCACCAACCACCAACGGCCACCACCAAAGCCAAACCGATTCCATCTTTTGCACTACAGCTAAAACTGGCAGTGATCCCTTGAGTTGGGGTGTAGCGGCGGAGTCAATGAAGGGGAGCCATCTAGACGAGGTCAAGCGCATGGTGGCGGAGTACCGGAAGCCGGTGGTCAAGCTTGGCGGAGAAACTCTCACAATAGCTCAGGTGGCTGCCATCGCAGCAAACGACCAAGGCGTGAGCGTTGAGCTTTGTGAATCAGCTAGAGCTGGCGTCAAGGCAAGCAGTGACTGGGTGATGAACAGCATGAACAACGGCACTGACAGTTACGGTGTCACCACCGGCTTCGGCGCCACCTCCCACCGTAGAACCAAAAATGGCAATGCTTTGCAGCTAGAACTCATCAGGTTTTTGAATGCTGGAATATTTGGCAATGGTACTGAATCAACTCACACCCTGCCACAGCCTGCAACTAGAGCAGCCATGCTAGTGAGGATCAACACACTTCTCCAGGGATACTCAGGCATTAGATTTGAAATCCTAGAAGCTATCACCAAGCTCATCAACAACAACATCACCCCTTGTTTACCACTTCGTGGTACTGTCACGGCTTCTGGTGATCTGGTCCCTCTTTCCTACATTGCTGGTTTGCTAACTGGCCGACAAAATTCCAAAGCCGTTGGACCATCCGGCGAGGTGGTTAATGCCAAGGAAGCTTTCCAATTGGCTGGCATTGACTCTGGGTTCTTTGAATTGCAGCCTAAGGAAGGGCTTGCCCTTGTAAATGGCACTGCTGTTGGTTCTGGGTTAGCTTCTATTGTTCTCTTTGATGCTAATGTATTGGCTATACTATCTGAAGTTCTATCAGCTATTTTTGCCGAAGTGATGCAAGGGAAACCTGAATTCACTGACCATTTGACTCATAAGTTGAAGCACCACCCTGGCCAGATTGAGGCTGCTGCTATCATGGAGCACATCTTGGATGGAAGTTCCTACATGAAGGCAGCAAAGAAGTTGCACGAGGTGGACCCCTTGCAAAAGCCAAAACAAGATCGATATGCACTTCGTACTTCTCCACAATGGCTTGGTCCTCTGATTGAAGTCATTCGATTCTCAACAAAGTCGATTGAGAGAGAGATTAACTCTGTGAACGACAACCCTTTGATTGATGTTTCAAGAAACAAGGCCTTGCACGGTGGTAATTTCCAAGGAACCCCTATTGGAGTTTCTATGGACAACACACGCCTGGCTCTTGCAGCAATTGGCAAACTCATGTTTGCTCAATTCACTGAGCTTGTGGATGATCATTACAACAACGGGTTGCCTTCAAATCTCACAGCAAGTAGAAATCCCAGCTTGGATTATGGTCTCAAGGGAGCTGAAATTGCCATGGCTTCTTATTGCTCCGAGCTCCAATATCTTGCGAATCCAGTCACAACTCATGTCCAAAGTGCTGAGCAACATAACCAAGATGTGAATTCCTTGGGTTTGATTTCTTCTAGAAAAACGTATGAAGCCATTGAAATCCTTAAGCTCATGTCTTCCACATTCTTGATTGCACTTTGCCAAGCAATTGACTTGAGGCATTTGGAGGAGAACTTGAAACACTCGGTGAAGAGCACTGTAAGTCAAGTTGCCAAGAGGACTCTGACCACTGGTGTTAATGGGGAACTCCATCCTTCCAGGTTTTGTGAAAAAGATTTGCTGAAGGTGGTCGATAGGGAAACTCTATTTGCCTACATTGATGACCCATGCCTTGCTACTTACCCATTGATGCAAAAACTGAGGCAAGTGCTTGTGGACCATGCATTAGTAAATGGAGAAAACGAGAAGGACTCAAAGACATCAATCTTTCAAAAGATTGCAACTTTCGAGGATGAGTTGAAGAGTCTCTTGCCTAAGGAGGTCGAAAGCGCAAGGGCTGCATATGAGAGTGGAAATCCAGCAATTCCAAACAAGATAAATGAATGCAGATCTTACCCACTGTACAAGTTTGTGAGGGAGGAGCTGGGAACTGAGTTGCTTACTGGTGAAAAGACCAGGTCTCCGGGCGAGGAGTTTGACAAATTGTTCACAGCAATATGCCAGGGTAAAATTATTGATCCACTTATGGAATGCCTTGGAGAGTGGAACGGTGCCCCTCTTCCAATTTGTTAA 2154 0.4675 MAPTTNGHHQSQTDSIFCTTAKTGSDPLSWGVAAESMKGSHLDEVKRMVAEYRKPVVKLGGETLTIAQVAAIAANDQGVSVELCESARAGVKASSDWVMNSMNNGTDSYGVTTGFGATSHRRTKNGNALQLELIRFLNAGIFGNGTESTHTLPQPATRAAMLVRINTLLQGYSGIRFEILEAITKLINNNITPCLPLRGTVTASGDLVPLSYIAGLLTGRQNSKAVGPSGEVVNAKEAFQLAGIDSGFFELQPKEGLALVNGTAVGSGLASIVLFDANVLAILSEVLSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYMKAAKKLHEVDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLALAAIGKLMFAQFTELVDDHYNNGLPSNLTASRNPSLDYGLKGAEIAMASYCSELQYLANPVTTHVQSAEQHNQDVNSLGLISSRKTYEAIEILKLMSSTFLIALCQAIDLRHLEENLKHSVKSTVSQVAKRTLTTGVNGELHPSRFCEKDLLKVVDRETLFAYIDDPCLATYPLMQKLRQVLVDHALVNGENEKDSKTSIFQKIATFEDELKSLLPKEVESARAAYESGNPAIPNKINECRSYPLYKFVREELGTELLTGEKTRSPGEEFDKLFTAICQGKIIDPLMECLGEWNGAPLPIC* 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0850 717 CDD PAL-HAL 62 527 IPR001106 -
Lja1g0850 717 PANTHER HISTIDINE AMMONIA-LYASE 19 717 IPR001106 -
Lja1g0850 717 Gene3D Fumarase/aspartase (Central domain) 264 712 - -
Lja1g0850 717 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 199 215 IPR022313 GO:0016841
Lja1g0850 717 Gene3D - 530 651 IPR023144 -
Lja1g0850 717 PANTHER PHENYLALANINE AMMONIA-LYASE 1-LIKE 19 717 - -
Lja1g0850 717 TIGRFAM phe_am_lyase: phenylalanine ammonia-lyase 26 706 IPR005922 GO:0005737|GO:0006559|GO:0016841
Lja1g0850 717 Pfam Aromatic amino acid lyase 64 535 IPR001106 -
Lja1g0850 717 SUPERFAMILY L-aspartase-like 26 717 IPR008948 GO:0003824
Lja1g0850 717 Gene3D - 17 263 IPR024083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0850 Lja-Chr1 8282377 8290127 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0850 6 717 Monolignol Biosynthesis Gene Families AT2G37040 80.886 0.0 1239
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0850 K10775 - gmx:100811101 1263.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g0891 5 8627176 8633595 Lja1g0850 1 8282377 8290127 ECH
Lja1g0851 1 8286825 8318153 Lja1g0850 1 8282377 8290127 ECH
Lja5g2657 5 53036812 53041051 Lja1g0850 1 8282377 8290127 ECH
Lja1g0850 1 8282377 8290127 Lja1g0850 1 8282377 8290127 ECH