Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0849 ATGAATGTGGAGACGCTTTTTACAGATAATGATGGAGGGGATTCTTTTTCTTGGCGCTGCAAGGAATCGACTGAAGAATATAAAGATAATGCACAAGAGGATACTGATGTGAATGATAAACATGGTGACAGCGAACCTCTATGCTGCAAATGCTCGCGTGGTGGAATGCTCATGCGCTGCTGTGGAAAAAGATGCCAAAGGAGTTACCATCCCTCTTGTGTGGACCCTCCTTTCAATTATGTTCCTCCAGGGTTTTGGTATTGTATCCAGTGTGTTGAAAAAAAGATAAAGTTTGGTGTGCATTCTGTTTCTGTTGGGGTGGAATCCATCTTTGATACCAGAGAGGTGGTTTCAGATAATGAAGTGACGCAAACGGAGTACTTTGTCAAATATAAGGGCCTTGCTCATGCTCACAACTGCTGGATTCCAGAAATACAAATGCTTCTTGAGGCTCAAAAACTTTTGGCTAAGTTTAAGAGGAAACTGCAGGTTGTCAGTTGGAGAAGACATTGGAGTAAACCTCAGCGCTTACTACTAAAAAGGGCAATTGTTTTACCAAAGCAAAATGATCAACATTTTGATGCGCACAAACACAATGGCAAAGATTTAGCTTACCGTTATGAGTGGCTTGTAAAATGGACCGGTCTTGGTTATGAACAAGTTACATGGGAGTTAGATGATGCTTCATTTATGACATCATCTGAAGGCATTAAACTCATAGATGATTACGAATGTCGTCTTAAGAGAGCAGACAGACTGTCAAATCCTTTCGAAGCTAAGGAGAGAAAAGCTTCTCTTGCTGAATTATCAGTGCCAGCATCTGGAGATTTACCAGGACTTTATAACCAGCATTTGAGTTATGTGACCAAGCTTCACATGTGTTGGCACAAAGGACAGAATGCTCTTATTTTAGAGGATCAAATTGACCAGGAGCGGGTTATGAAGGTGATTTTGTTTATACTATCTTTGAATCATAATGTGAAGAGGCCTTTTCTCATCATCACAACTTCTTCTGGCCTCACTGTATGGGAAACAGAATTCTTACATTTGGCACCATCTGCCAATCTTGTAGTTTACAAGGGAAACAAAGATGTACGGAGTTGCATCAGGGCATTAGAGTTTTATAATGAAGATGGTGGGATCTTATTTCAAATATTATTGTCATCTTCTGATATTATCGTTGAGGACTTACATGAACTAAGATGCATTTCATGGGAAGCAATAATAATTGATGAATGCCAGCGATCCAAAAGTTTAAGTCATATTGACTATATCAGGACTCTAGCAGCTGAGATGAGGCTTCTTCTCGTTAGCGGACAAATCAAGGAAGATCGGGCTGATTATATCAAACTGCTTTCATTCCTCAAGTCTGGACATCATAGGTTAAATATTGCTCAAATGGAGACTTACTTCTCTGCTAGTATTTCCAATTTGAAGAGCCAATTGAAACAATATGTTGCATATAAGTGCAATTCAGGCTCCACTAGGTTTGTAGAGCATTGGGTTCCTGCCCAGCTTTCCAATTTGCAGCTTGAGCAGTATTGTTCAATGCTACTTTCAAACTCAATATTGTTACAGTCAAGCCAAAAATCGGACACAGTTGATGCTCTCCGTGACCTTATTATCTCAACAAGGAAGTGCTGTAACCACCCATATCTCCTGGACCCGTCACTGCATAACTTTGTTACTAGAGGTCGACCTGTTGAAGAGCATCTAAATATTGGAATAAAAGCTAGTGGAAAACTGCAACTTCTTGAAAGAATCCTTTTTGAAGCAAGACGTCGCGGGTTAAGAGTGCTAATAATATTTCAGTCAAGTGATGGTTCTGGTTCAATTGGAAATATTTTGGATGATGTTCTCTGTCAGAGATTTGGTCAAGATTGCTATGTACGATATGATAGAGGTTATATCAAATCTAAGAAGCAAGCTGCTTTAGATACATTTAATGACAAAGAAAGTGGAAAATTTGTCTTCTTGATGGAAATCCGGGATTGTCTCCCCAGCGTTAAGCTTTCATCGGTGGATACTGTTATATTATTTGACAGTGATTGGGACCCGCAAAATGATTTAAGATGCTTACAAAAGATGTCTGTAAGCTCACAGTTCAGCCAGTTAACAGTTTTCAGATTGTACTCATATTTCACTGTTGAAGAAAAGGTTTTAATGCTTGCAAAAGAGGGTATCCGTTTAACTGTTGACAACAATATGCAATTGATTAACCAGAGTATTTGTCACGCCCTGCTAAAATGGGGTGCCTCCTATTTGTTTGATAAGCTTGATTACTTACATGGCGGTGAATTCTCAGTCTCTGCTCCAGACATCTGCTCTGATCAATCACTTCTAAGTGATATAATTTGTGAATTATCACCCAATTTGGTTTATGGTGGTGGTGAGCCTGGCGACAACACTGATTGTAATGGATGGTCATTCATATCAAGAGTACAAAAGAATGGAGGGGAATATGCAAGGAACATTTTATTGCTAGGAGAAAGAGAAATAAAGAAATTGGGGAATGAGCCACACACTTCTTCCTGGAGTGACCTTCTCAAAGCAAGGCGTCCTCAATGGAAGCTTTTGTCTGTTTCATCTCAACGGATCAGGAAAACTGTCAAGCATTTTGATCGCATAATTAAAGAATCTGAATGTGAAAATGATGCCGTTGTAAGAAAGAGGAGGAAAGTGTCCATAGACTATGTTGATCCCAAAAGAAGGAAAGTGTCCAAGGATAATGTCAATCCCAAGGAGAGGAAAGTGACAAAGGATAAAGTTGACCCCAAGAAGAGAGTACCCAAGGATATGGTTGATACAAAGGGAAGAAAATTGACAAATGATGTTTTTGCAAATAAGACTAGGAAGGTTTCCAAGGATATTATTGATGCAAAAAGGAGGGAAATGTCCAAGGATATTAATGTGAATAGGAGGGGATTGTCCAAGGATGTTGCTAATTCCAAGAGCAGGAAAGTGACCAAGAATGTATTTAATTCCAAATATCTTAAAGCATATAATAGGGCAAGGAAATTGAATGGTATTAGGAATGGCTTTTCTAAGGTACTTGATTCTACAGTGCATCCTTTGACCAGTGAAATCACAGGGGCAGCTGCAATGAATATGCAATTTTCAAAACAAAAGAAACTGCCTGACATGCCGAAAAGCACTGAATTATTGCCAAAGCCTGATATATCAGAGCTCTGTGACGTTTTGCATTTTCCGAAAAATGTCAAGGCTGTCGCCACGAGGGTTCTTGAGCACATATTCGAACATTACAATATTAGTTGCCTAGAAGTTTCTACTGCACAGGCATTTGAAATATCTGTGTGTTGGCTAGCAGCTTCCTTGTTGAAACACAAGATTGATAGGAAAGATTCACTTCATCTTGCAAAACAGCTCTTGAATTTTGATTGTAAGGAGGATGAAGCCAGTGATGTATACTCTGAACTGTCAAAGCATAAGAAGGATTTTTCAACTTTTTTACAAAATGGACTTCATGTTGAAAAATGTAATATAGATGGTGCTTCAGACTACACAACACCTGAGCTGAAAGATTTGGCACAAAAGGATAAGCAGGAGGGTTTTCAGGGTCCTCGTGTTTCAAATCTTATGAAACCTGCCACAAATGAACATGATCATCAAAGGAAATCTTTCACAACAGTGCTATCTCCCCAAGACGAGACTCACACAGAAAAGTTTCATAGTGTACCATATACGGCTCATGAAAATTGTCTATCTCAAAGAACACCCGGTAGTTTTCCTGTGGAAGCAGATGCCATCTCCATGGAATCTGATGCAGATGAAAGAACGAATGCCAGTTTGCCTGTTGAATCAGATGCTATCCCCATGGAATGTGATGCAGATGAGAGAACGAATGCCATGACCTCAATAACTGCTGAAGTTTCATTCTACGAGCACGGGAATGAAGTCCCTAATTCAAGTAGTGATCCTAATAATGTCAACCCTGTTGCGAGTTCCTTAGAAAGACAGAGTCCTATTGTTAATACAGATACTGCACAGTCTGACATCAATTTTTCTGAAGATCATCAAATTTTAATGAATGAGGAAGTGGTTGCTGTTGACAATTCTATGAGTATGTCAACTCATCCTGCACAATTTAACAGTGTTGAGACATATACTGTAACTTGTGATAATACTGCTGTTCCTGAGGTCAGACATTGGTACAGTACAGAGCGTTCTGTATGTGGGGAGCCAACTGATTTGCAGTTTGATGAGAGTACCCTACCATATATGCAACCATCACATGCACATTTACTGCCATTGCCTCAGATGACTATGTCTGATATTCCATCCTATCTGGAGGACAATTTTGCAAGTGTCCTGGCTCAAGATAATCTTTTTTATCATAGTGGTGTAGATCATTGTTACACTCACGAGGCTGAAGTAATATCACAAGCACCAATTGACCCAGTGGAGCGAGTGTACAATTCACCTCTGACACTGCAACCCTCCACTAGTGTGCCCATTCATGAAAATGCAACACATATACCTCAAGTCCCAAACAGTAATCCTTTTCTAGCTCACTCTGGAACATCTGAACTGCCCCCCGTTGCATATCCAGACCCGCTGCTAATGGAAATAGAGAGAATAGAAAAGATGAATGAAGAAGCTGACAAGATACATGAGAAAATAAGATTGCAGGTCGTATCTGACTTCGAAAAGGAGCGTGGAAAGTTAGTTGAAAAGTACATGACGTTGTTTCAAAATCTCGATACTGCAGTTGAGCTGAAGAAGAGGGAACTTGAGACACAATATGAATTAGTTCTCATGAATAGGGTATTAGCTGAGGTTTGGTTCCAAAAGCTTGATAATTCAGCACAAAGCTTAGAACAAGTGGCAATGCCTAGCTTTTCCAGTTCCCATGTATCAAGGAGCCATATCTCTCATATTCCTGCTCAAAGATTTGAACAATTTACTACTGAACGTCCTCCCATATAA 4947 0.3964 MNVETLFTDNDGGDSFSWRCKESTEEYKDNAQEDTDVNDKHGDSEPLCCKCSRGGMLMRCCGKRCQRSYHPSCVDPPFNYVPPGFWYCIQCVEKKIKFGVHSVSVGVESIFDTREVVSDNEVTQTEYFVKYKGLAHAHNCWIPEIQMLLEAQKLLAKFKRKLQVVSWRRHWSKPQRLLLKRAIVLPKQNDQHFDAHKHNGKDLAYRYEWLVKWTGLGYEQVTWELDDASFMTSSEGIKLIDDYECRLKRADRLSNPFEAKERKASLAELSVPASGDLPGLYNQHLSYVTKLHMCWHKGQNALILEDQIDQERVMKVILFILSLNHNVKRPFLIITTSSGLTVWETEFLHLAPSANLVVYKGNKDVRSCIRALEFYNEDGGILFQILLSSSDIIVEDLHELRCISWEAIIIDECQRSKSLSHIDYIRTLAAEMRLLLVSGQIKEDRADYIKLLSFLKSGHHRLNIAQMETYFSASISNLKSQLKQYVAYKCNSGSTRFVEHWVPAQLSNLQLEQYCSMLLSNSILLQSSQKSDTVDALRDLIISTRKCCNHPYLLDPSLHNFVTRGRPVEEHLNIGIKASGKLQLLERILFEARRRGLRVLIIFQSSDGSGSIGNILDDVLCQRFGQDCYVRYDRGYIKSKKQAALDTFNDKESGKFVFLMEIRDCLPSVKLSSVDTVILFDSDWDPQNDLRCLQKMSVSSQFSQLTVFRLYSYFTVEEKVLMLAKEGIRLTVDNNMQLINQSICHALLKWGASYLFDKLDYLHGGEFSVSAPDICSDQSLLSDIICELSPNLVYGGGEPGDNTDCNGWSFISRVQKNGGEYARNILLLGEREIKKLGNEPHTSSWSDLLKARRPQWKLLSVSSQRIRKTVKHFDRIIKESECENDAVVRKRRKVSIDYVDPKRRKVSKDNVNPKERKVTKDKVDPKKRVPKDMVDTKGRKLTNDVFANKTRKVSKDIIDAKRREMSKDINVNRRGLSKDVANSKSRKVTKNVFNSKYLKAYNRARKLNGIRNGFSKVLDSTVHPLTSEITGAAAMNMQFSKQKKLPDMPKSTELLPKPDISELCDVLHFPKNVKAVATRVLEHIFEHYNISCLEVSTAQAFEISVCWLAASLLKHKIDRKDSLHLAKQLLNFDCKEDEASDVYSELSKHKKDFSTFLQNGLHVEKCNIDGASDYTTPELKDLAQKDKQEGFQGPRVSNLMKPATNEHDHQRKSFTTVLSPQDETHTEKFHSVPYTAHENCLSQRTPGSFPVEADAISMESDADERTNASLPVESDAIPMECDADERTNAMTSITAEVSFYEHGNEVPNSSSDPNNVNPVASSLERQSPIVNTDTAQSDINFSEDHQILMNEEVVAVDNSMSMSTHPAQFNSVETYTVTCDNTAVPEVRHWYSTERSVCGEPTDLQFDESTLPYMQPSHAHLLPLPQMTMSDIPSYLEDNFASVLAQDNLFYHSGVDHCYTHEAEVISQAPIDPVERVYNSPLTLQPSTSVPIHENATHIPQVPNSNPFLAHSGTSELPPVAYPDPLLMEIERIEKMNEEADKIHEKIRLQVVSDFEKERGKLVEKYMTLFQNLDTAVELKKRELETQYELVLMNRVLAEVWFQKLDNSAQSLEQVAMPSFSSSHVSRSHISHIPAQRFEQFTTERPPI* 1649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0849 1648 Gene3D - 102 166 - -
Lja1g0849 1648 SUPERFAMILY Chromo domain-like 64 164 IPR016197 -
Lja1g0849 1648 SMART chromo_7 104 163 IPR000953 -
Lja1g0849 1648 SMART chromo_7 170 248 IPR000953 -
Lja1g0849 1648 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 498 731 IPR027417 -
Lja1g0849 1648 Gene3D - 496 730 IPR027417 -
Lja1g0849 1648 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 18 1631 - -
Lja1g0849 1648 MobiDBLite consensus disorder prediction 904 930 - -
Lja1g0849 1648 SUPERFAMILY Chromo domain-like 206 243 IPR016197 -
Lja1g0849 1648 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 318 460 IPR027417 -
Lja1g0849 1648 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 20 101 IPR013083 -
Lja1g0849 1648 Gene3D - 1522 1604 - -
Lja1g0849 1648 CDD SF2_C_SNF 579 690 - -
Lja1g0849 1648 ProSitePatterns Zinc finger PHD-type signature. 48 91 IPR019786 -
Lja1g0849 1648 Coils Coil 1530 1550 - -
Lja1g0849 1648 MobiDBLite consensus disorder prediction 1192 1211 - -
Lja1g0849 1648 ProSiteProfiles Zinc finger PHD-type profile. 45 94 IPR019787 -
Lja1g0849 1648 Gene3D - 280 495 IPR038718 -
Lja1g0849 1648 SMART PHD_3 47 92 IPR001965 -
Lja1g0849 1648 Gene3D - 188 243 - -
Lja1g0849 1648 MobiDBLite consensus disorder prediction 1304 1326 - -
Lja1g0849 1648 ProSiteProfiles Chromo and chromo shadow domain profile. 105 161 IPR000953 -
Lja1g0849 1648 PANTHER HELICASE PROTEIN MOM1-LIKE ISOFORM X1 18 1631 - -
Lja1g0849 1648 Pfam SNF2-related domain 288 553 IPR000330 GO:0005524|GO:0140658
Lja1g0849 1648 Pfam Chromo (CHRromatin Organisation MOdifier) domain 107 161 IPR023780 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0849 Lja-Chr1 8267522 8280572 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lja1g0849 SNF2_N 2.3e-09 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0849 - K11643 gmx:100813574 1712.97