Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0846 ATGGCAGACAAGAAAAGGACAAAAAACGAGGTTGTTCTGCGAATTTCCGGCACTGAAGAAGCAGCAGCAGCAGCTTTGTACGAAAACAGAGATTCTCGAAGCTCCCCAGTTGCTGAAAGCAGTTCTCATCACTCTCCTCAGCTCAATGCCCAGATGGGTCAAGTTTCCACTGAGATGGTCACAACTACTCGCAGGTTGTTGGGTCGGTCGGAGTTTTCCAAGCCCAAGTCGAGAATGGTGGAAGCTGTTTCTCCAAGGGGTGTTTCTGATGCAACTCTTGTCACCCCAGGAACCCCTTTGATTGGGACTCCAAAGGAAGAAGAAGAGGAAGATGATGATGATGATGAAGTGTACAAGACTGCACATGTTGAAGTGAGTAAGAGATCTGGTAAGAAGTGGAAACTTATGGGTTTGACTGAGTGGTTTGCTTTTGTTTGCATTCTGGGGTTTTTTATAGCAAGCTTGGTGGTTCATAAGTTGAAACATAAGGAAATTTGGGGTTTGGGACTGTGGAAGTTGTGTCTATTGGCACTGGTTGTCCTCTGTGGTAGAATGGTTACTGAGTGGTTCATCAATTTTTTGGTTTTCTTGATGGAAAGGAACTTCTTGTTTAAGAAGAAGGTTTTGTATTTTGTTTATGGTGTGAAGAAGAGTGTTCTGGCCTTTATATGGTTGAGTTTGGTTCTTTTGGCATGGGGTCTACTTTTGGACAATGGAGTCAAGAGAACCAGAAAAGTTAGAAGGATTCTTAATTATATTACTAGGGCCCTTGCCTCTTGTCTTATTGGAGCAGCTATATGGTTAGCAAAAACATTCTTCATAAAGTTGTTATCATCAAATTTCCAATCTACTAGATTTTTTGACAGGGTGCAAGAATCTATTTTTCATCAGTACATTCTTAGAACCCTTTCAGGCCCTCCACTGATGGAGATGACTGGAACAGTAGGCAAGACTTCAAGTAGTGGCAGACTCAGTTTTAGGACCTTGATTAGAGATAATAAGAATGAAGGGAAGAAAGAACAAGTCATTGATGTGGATAGGCTGAAGAAAATGAAACAAGAGAAAGTTTCTGCTTGGACCATGAAAGGGCTGATTAATGTGATTAGGAGTTCTGGGTTGTCTACCATCTCCTATACACCAGGGAGTTTCTACGAAGATGAGAGTGACCAGAAAGATAATGAAATTTGTAGTGAGTGGGAGGCGAAGGCTGCTGCTTATCGAATTTTCAGGAATGTAGCCAAGCCAGGAAACAAGTACATTGAGAAGGAAGACCTCTTGCGCTTCATGAAAAATGAAGAAGTGGAAAATGTGCTTCCACTGTTTGAAGGGGCAGTTGAGACTGGAAGAATTAAGAGGAAGTCTCTTAAGAACTGGCTGGTGAAAGTCTACCTTGAACGTAGATCACTTGTGCATTCCCTAAATGATACCAAAACAGCTGTTGAGGACTTGAATAAGATTGCTTCTGTAATCGTCCTTGTTGTGATCATCATCGTGTGGTTACTCTTAATGGGATTCTTAACAACACAAGTTCTTGTTTTTATTTCATCCCAGCTTTTACTTGTGGTGTTTATGTTTGGCAACACAGCTAAGACTGTATTTGAAGCTATTATATTTGTTTTTGTGATGCACCCGTATGATGTTGGCGATCGTTGTGTCATTGATGGCGTTCAGATGATTGTAGAAGAGATGAACATTCTGACTACAGTCTTTCTGAGATATGACAATGAAAAGATATTTTACCCAAATTCTGTTCTGTCAACCAAGCCAATCAGCAACTTCTACAGGAGTCCAGAAATGTGTGATACGGTTGAATTTGCTGTGGATTTTTCTACTTCAATAGAAAGAATTGGAGCTTTAAAGGCTAAGTTAAAAGCGTACTTGGAGAGTAGGCCTCAACACTGGCGTCCGAACCACAGTGTAATAGTTAAGGATATTGAGAACGTAAACAAGATGAAAATGGCTCTATATGTTACTCACACCATCAATTTTCAGAACTATGTGGATAAGAACAGCCGAAGATCTGAATTAGTCCTGGAGTTAAAGAAAAATCTTGAAGATCTAAGTATTAAATATCATCTGCTACCACAAGAAGTTCATCTCAGTTATGTAAGATCAGAAGACTCAACGGTACAAATAGAAAGAGTTTGA 2148 0.4027 MADKKRTKNEVVLRISGTEEAAAAALYENRDSRSSPVAESSSHHSPQLNAQMGQVSTEMVTTTRRLLGRSEFSKPKSRMVEAVSPRGVSDATLVTPGTPLIGTPKEEEEEDDDDDEVYKTAHVEVSKRSGKKWKLMGLTEWFAFVCILGFFIASLVVHKLKHKEIWGLGLWKLCLLALVVLCGRMVTEWFINFLVFLMERNFLFKKKVLYFVYGVKKSVLAFIWLSLVLLAWGLLLDNGVKRTRKVRRILNYITRALASCLIGAAIWLAKTFFIKLLSSNFQSTRFFDRVQESIFHQYILRTLSGPPLMEMTGTVGKTSSSGRLSFRTLIRDNKNEGKKEQVIDVDRLKKMKQEKVSAWTMKGLINVIRSSGLSTISYTPGSFYEDESDQKDNEICSEWEAKAAAYRIFRNVAKPGNKYIEKEDLLRFMKNEEVENVLPLFEGAVETGRIKRKSLKNWLVKVYLERRSLVHSLNDTKTAVEDLNKIASVIVLVVIIIVWLLLMGFLTTQVLVFISSQLLLVVFMFGNTAKTVFEAIIFVFVMHPYDVGDRCVIDGVQMIVEEMNILTTVFLRYDNEKIFYPNSVLSTKPISNFYRSPEMCDTVEFAVDFSTSIERIGALKAKLKAYLESRPQHWRPNHSVIVKDIENVNKMKMALYVTHTINFQNYVDKNSRRSELVLELKKNLEDLSIKYHLLPQEVHLSYVRSEDSTVQIERV* 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0846 715 Pfam Mechanosensitive ion channel 484 689 IPR006685 GO:0016020|GO:0055085
Lja1g0846 715 SUPERFAMILY Sm-like ribonucleoproteins 534 593 IPR010920 -
Lja1g0846 715 MobiDBLite consensus disorder prediction 94 115 - -
Lja1g0846 715 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 4 704 IPR016688 -
Lja1g0846 715 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 4 704 - -
Lja1g0846 715 Gene3D - 544 593 IPR023408 -
Lja1g0846 715 MobiDBLite consensus disorder prediction 33 55 - -
Lja1g0846 715 PIRSF Memb_At2g17000 2 715 IPR016688 -
Lja1g0846 715 MobiDBLite consensus disorder prediction 27 55 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0846 Lja-Chr1 8250585 8254108 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0846 62 701 Mechanosensitive Ion Channel Family AT5G12080 52.036 0.0 697
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0846 K22048 - gmx:100777332 1058.13