Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0843 ATGAAGGGGAAGATAGTGAGAGAGTGTCTTAACAAGTGGAAGAAAATGGGAACTAGAGTGATACCTTGTGCTTCCTTTGATTATTGCTGTCAATGGGCTTTGTGGTCTTCCATGCATGAAAGCTGCTGCAATATCCCTGATGATGTCCCAAAGGGTCACTTGGTTGTCTATGTAGGAGAGAATCACAAGAGATTTGTCATCAAGATTACATTACTCAACCATCCACTCTTCAAGGCCTTGCTGGATCAAGCTAAGGATGAATATGATTTCATTGCTGAAGCAAAACTCTGTATTCCTTGCAATGAACATCTTTTCCTCAGTGTCCTTCGCTGTGCAAGCTATCCGCATAAGTGA 354 0.4209 MKGKIVRECLNKWKKMGTRVIPCASFDYCCQWALWSSMHESCCNIPDDVPKGHLVVYVGENHKRFVIKITLLNHPLFKALLDQAKDEYDFIAEAKLCIPCNEHLFLSVLRCASYPHK* 118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0843 117 PANTHER AUXIN-RESPONSIVE FAMILY PROTEIN 3 116 - -
Lja1g0843 117 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 3 116 IPR003676 GO:0009733
Lja1g0843 117 Pfam Auxin responsive protein 37 111 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0843 Lja-Chr1 8238794 8239557 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0843 31 113 Calmodulin-binding Proteins AT4G34750 41.379 2.42e-19 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0843 K14488 - gmx:100793017 189.119
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0843 1 8238794 8239557 Lja1g0843 1 8238794 8239557 ECH
Lja1g0843 1 8238794 8239557 Lja5g2653 5 52996573 52997326 PCT