Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0840 ATGATGGAAATGAGAGATACAAGGAGCAATGCCTCCTTGTTGGTCTCTCTTGTTTTGTTCTTCTCCACTTTTGTTTCGCTATTACCGGTTCAATGTGAGGACGGGGATGATTCTTTTGTACCCTCATTCTACACTGATGAAATCTACAAGGAGCTTGAAGGTCTCACTAAGGCTTTCACCAGGGACATTAAGGAAGAATTAAACTTCTGCATAAAGGATGTGAACAAAGACTGGGAGGAGGCTTTTGATTTTAAAGGAAAATTGGATTTTGTGGATTCCTGTGTTAAGCAAAAGGGTGATTTCAGAGATCGAGTGTGTACGACTGCTGAAATAAGGCACTACTTTCGAAGTTTATTCGAACAGGGGGCCTCATCTGCCAGTTATCTAAAGCCTAATAGAAATTGCAATTTGACTTCATGGGTTTCTGGTTGTGAACCTGGTTGGAGCTGTAGTGCTGGCCAGCAAATTGACCTAAAAAAGGATATAAAGGATATTCCTTCTAGAACTAGTGACTGTGAACCTTGTTGTGAGGGGTTTTTCTGCCCTCAAGGATTGACTTGCATGATAACTTGCCCACTTGGTTCTTATTGTCCACTCGCAAAATTGAATGAAACTACTGGAGTATGTGATCCATATAATTACCAGATTCCTGCAGGAGAAACAAATCATACTTGTGGTAGTGCTGATATTTGGTCTGGCGTTGTGAACAATAGTAACATCTTCTGTTCTCCAGGATCATACTGCCCATCTCCAACGCGCAAAGTTTCTTGCGATAGTGGATATTACTGCAGGATGGGTTCAACTCATCAAAATCCATGCTCCCAGTTGAGTAGCTGTAATCCAAACACAGCCAACCAGAATATGCATGCCTACGGTGCTCTGCTTATTGTTGCTTTGAGTGCTCTTCTGATCTTCATTTATAACTGTTCTGATCAAGTTCTAGCTACTCGAGAAAGAAGGAAGGCAAAAACCAGGGAAGCTGCAGTAAAACATGTTAGAGAAACTACACAAGCTCGTGAAAAGTGGAAAATAGCAAAAGATGCTGCTAAGAAGCATACAGCCGGTTTGCAAAAGCAGTTGTCTCGCACCTTTTCTCGAAAAAAATCAGGAAGGCAAGGAGATCAACTTCCATCAGTGGCTTCAGATTCATCAAGCAAACCTGAGGCTTCATCTGCTGGTTCTAATGCGAAAAAAAATGAGCCTAGCAACCTCACTATGATGTTGAACTCCCTTGAGAATGATCCGAATAGTGATGAAGGATTTGATCTTCAGATTGGAGATAAAAACATAAAAAAGCAGATTCCAAGGGGAAAAAAGTTACATACACATAGCCAAATTTTAAGGTATGCTTATGGTCAGCTTGAGAAGGAGAAAGCTCAGCAAGAGCAAAACAAGAACTTGACTTTCTCAGGAGTACTTTCTATGGCTACTGAAGGTGAGGTGAGGACAAGGCCAGTGATTGAGGTAGCTTTCAAAGATCTGACTCTCACTTTGAAAGGGAAAAACAAACATCTACTGAGGTGTGTGACGGGTAAAATCATGCCTGGTCGAGTTTCTGCTGTCATGGGCCCCTCAGGAGCTGGAAAAACCACATTTCTTTCAGCTTTGGCAGGAAAATCAAGAGGATGCACCATGTCAGGCTCAATTCTAATTAATGGAAAACCTGAATCCATTCACTCATATAAGAAAATTACTGGTTTTGTGCCACAAGATGATATTGTGCACGGGAACTTGACAGTGGAGGAAAATCTTCATTTCAGTGCAAGATGCAGACTCCCTGCCGACATGCCAAAACCAGATAAGGTTCTGATTGTTGAAAGAGTGATTGATGCATTGGGACTCCAGCCAGTGAGGGATTCTCTAGTTGGGACAATAGAGAAGAGGGGCATATCTGGAGGGCAAAGAAAACGTGTGAATGTAGGGCTGGAGATGGTGATGGAACCTTCATTGTTAATCTTAGATGAGCCTACAACTGGTTTGGACAGCGCATCTTCCAGTTTACTGCTTAGAGCGCTTAGACGTGAAGCTCTTGAAGGGGTAAACATCTGCATGGTACTTCACCAACCAAGCTATACTTTGTTCAGAATGTTTGATGATATAATATTTCTAGCCAAAGGTGGCCTTACTGCATATCATGGTCCTGTTAAAAAGGTAGAAGAATACTTTGCTAGCATTGGAATCCCCGTACCAGATCGTATGAATCCTCCAGACCATTTCATTGACATTCTGGAAGGTTTAGTGAAACCAAGTTCAGGTGTAACTCATGAAACACTTCCTGTCAGGTGGATGCTTCATAATGGATATCCAGTACCACTAGACATGCTTCATTTAGCTGATCAAATTGCTGCATCTTCATCTACCTCAAATGTAACCGGTGCAACAAAGGCTACTGAAGAATCTTCTGATCAATCCTTTTCTAGAGAGGTTTGGGAAGAAATGAAGAGTAATATTCGTATACAACGAGATAACATAGATGAAATCTTCTCAAGAACAAAGGATTTATCAAACCGAGTAACTCCTGGGGTGGCCCGGCAATACAGATACTTCGTTGGGAGGGTTAGCAAGCAGCTTCTGCGGGAAGCAAAATTACAAGCTGTTGACTATCTCCTTTTATTTGTTGCTGGTGCTATCTTAGGAACTCTTACAAAAGTGAATGATGAAACATTTGGTTCCCTTGGCTATACATATACTGTCATTGCAGTCTCTCTACTTAGCATGATTGCGGCCCTCAGATCATTTTCTCTGGATAAATTACAATACTTGAGGGAGAGTGCAGCTGGGATCAGCAGTCTGGCCCATTTTCTGTCCAAAGATACCGTTGATCTTTTCAATACAATCATCAAACCTGTGGTTTATTTGTCCATGTTCTATTTTTTTAGCAACCCAAGGTCAACCTTTATAAGTAACTACATAGTATTGTTATGTCTGGTGTACTGTGTGACAGGCATAGCTTATGCATTAGCCATTTTCTTTGATCCTGGTCCTGCACAACTGTGGTCAGTGCTTCTTCCTGTGGTTATGACTCTCGTAGCCAACCAGAACAAAGATACTAAACTGATGAAGACCCTAGTACAGTTATGCTACCCAAAATGGGCTTTGGAGGCCTTTATCATTGCAAATGCTGAAAGGTACACTGGAGTGTGGCTGATAACTCGTTGCGGTTCATTGATAAGCAGTGGTTACGATGTCAGCAAATGGCCTATTTGTCTGGTTGTCCTCATTGTGAATGGTATTGTTGCCCGAGTTGTAGCCTTCTTTTGTCTAGTGATTTCCCACAGAAGGTGA 3285 0.418 MMEMRDTRSNASLLVSLVLFFSTFVSLLPVQCEDGDDSFVPSFYTDEIYKELEGLTKAFTRDIKEELNFCIKDVNKDWEEAFDFKGKLDFVDSCVKQKGDFRDRVCTTAEIRHYFRSLFEQGASSASYLKPNRNCNLTSWVSGCEPGWSCSAGQQIDLKKDIKDIPSRTSDCEPCCEGFFCPQGLTCMITCPLGSYCPLAKLNETTGVCDPYNYQIPAGETNHTCGSADIWSGVVNNSNIFCSPGSYCPSPTRKVSCDSGYYCRMGSTHQNPCSQLSSCNPNTANQNMHAYGALLIVALSALLIFIYNCSDQVLATRERRKAKTREAAVKHVRETTQAREKWKIAKDAAKKHTAGLQKQLSRTFSRKKSGRQGDQLPSVASDSSSKPEASSAGSNAKKNEPSNLTMMLNSLENDPNSDEGFDLQIGDKNIKKQIPRGKKLHTHSQILRYAYGQLEKEKAQQEQNKNLTFSGVLSMATEGEVRTRPVIEVAFKDLTLTLKGKNKHLLRCVTGKIMPGRVSAVMGPSGAGKTTFLSALAGKSRGCTMSGSILINGKPESIHSYKKITGFVPQDDIVHGNLTVEENLHFSARCRLPADMPKPDKVLIVERVIDALGLQPVRDSLVGTIEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTTGLDSASSSLLLRALRREALEGVNICMVLHQPSYTLFRMFDDIIFLAKGGLTAYHGPVKKVEEYFASIGIPVPDRMNPPDHFIDILEGLVKPSSGVTHETLPVRWMLHNGYPVPLDMLHLADQIAASSSTSNVTGATKATEESSDQSFSREVWEEMKSNIRIQRDNIDEIFSRTKDLSNRVTPGVARQYRYFVGRVSKQLLREAKLQAVDYLLLFVAGAILGTLTKVNDETFGSLGYTYTVIAVSLLSMIAALRSFSLDKLQYLRESAAGISSLAHFLSKDTVDLFNTIIKPVVYLSMFYFFSNPRSTFISNYIVLLCLVYCVTGIAYALAIFFDPGPAQLWSVLLPVVMTLVANQNKDTKLMKTLVQLCYPKWALEAFIIANAERYTGVWLITRCGSLISSGYDVSKWPICLVVLIVNGIVARVVAFFCLVISHRR* 1095
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0840 1094 Pfam ABC-2 type transporter 687 1093 IPR043926 GO:0140359
Lja1g0840 1094 SMART AAA_5 515 707 IPR003593 -
Lja1g0840 1094 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 489 712 IPR027417 -
Lja1g0840 1094 MobiDBLite consensus disorder prediction 319 402 - -
Lja1g0840 1094 ProSitePatterns ABC transporters family signature. 630 644 IPR017871 GO:0005524
Lja1g0840 1094 PANTHER WHITE-BROWN COMPLEX HOMOLOG PROTEIN 30-RELATED 37 1089 - -
Lja1g0840 1094 MobiDBLite consensus disorder prediction 319 353 - -
Lja1g0840 1094 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 489 730 IPR003439 GO:0005524
Lja1g0840 1094 MobiDBLite consensus disorder prediction 370 402 - -
Lja1g0840 1094 CDD ABCG_EPDR 487 713 - -
Lja1g0840 1094 MobiDBLite consensus disorder prediction 788 808 - -
Lja1g0840 1094 Gene3D - 479 725 IPR027417 -
Lja1g0840 1094 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 37 1089 - -
Lja1g0840 1094 Pfam ABC transporter 509 657 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0840 Lja-Chr1 8207807 8215519 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0840 516 709 Calmodulin-binding Proteins AT2G36910 28.218 1.58e-09 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0840 - - mtr:MTR_7g101780 1761.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g0903 5 8729316 8740217 Lja1g0840 1 8207807 8215519 ECH
Lja1g0840 1 8207807 8215519 Lja5g0903 5 8729316 8740217 ECH
Lja1g0840 1 8207807 8215519 Lja1g0840 1 8207807 8215519 ECH
Lja5g2650 5 52947904 52965945 Lja1g0840 1 8207807 8215519 ECH