Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0839 ATGATACGGTTATTTGATGCAATCAGGTCAGCTGCTATGAAGTGTTTTACATTCTACTATGTAGAGAAGAAAGATGAACCAAAAAGCTTTCAATCAGCATCTGGTCTGACAGACTGTTCAACATATGTTGAGGCTGAGGTTAGAAGATCTGGTTCTGAATTGAATTCACAGGATGTCTCAGACAGTGGCAGCACAGAATCCCTCAGGAGGAGTGCAGTTCCCAATATGTCCCAAAGACCAAGCAACCTTAGAGTGTTTACTGTATCTGAACTGAAATCAGCCACCAAGAGTTTTAGTCGCTCTGTTATGCTTGGAGAGGGTGGGTTCGGGTGTGTCTACCTGGGATTGATAAGAAGTGTAGAGGACCCATCAAGAAGAATTGAAGTTGCAATTAAACAGCTTAGTAAAAGAGGAATGCAGGGGCATAGGGAATGGGTGACAGAAGTGAATGTGTTGGGCATCGTTGAGCATCCCAATCTTGTGAAACTTGTGGGGTACTGTGCTGATGATGATGAAAGGGGAATCCAGCGGCTTCTGATTTACGAATACATGCCTAACAGAAGTGTAGAAGACCATTTATCTCACCGGTCCGAGACTTCTCTATCATGGAATAGGAGATTGAAAATAGCTCAAGATGCAGCTCGTGGATTAACATACCTGCATGAAGAAATGGATTTTCAGATAATTTTCAGAGATTTCAAGTCTTCAAATATCCTTTTGGATGAAAATTGGAACGCAAAGCTATCAGACTTCGGGTTAGCAAGATTGGGACCAACTGATGGACTAACTCATGTCTCAACAGCGGTTGTAGGAACAATGGGATATGCATCCCCGGAATATGTTCAAACTGGACGTCTCACATCAAAGAATGATGTGTGGAGCTATGGCGTCTTCCTTTATGAACTCATTACCGGCAGGCGCCCTTTAGACCGAAACCGCCCCAGGGGTGAACAAAAGTTGTTGGAATGGATAAGGCCTTACCTATCAGATGCAAAGAAATTTCAACTGATATTAGATCCAAGACTTGATAAGAAACAAGTTATCAAGTCAGCACAGAGACTTGCTATCATAGCTAACCGGTGCTTGGTAAAAAACCCGAAGAATCGCCCGAAGATGAGCGAGATATTGGAAATGGTGAACGGAATAGTAGAATTTTCACCCAGCTCTAGTCCCCAGATACCCCTGAGGAAGGCAAAAGTGGAAGCTTCCCGTGACACTGAAGTCAACAAGAAACGGACCATGGATATGAAGCCTGTAGAAGGTAATTGGTTTGCTAGAATCTGGAGGCCAAAGCTTGCAAGAACATGTTGA 1311 0.434 MIRLFDAIRSAAMKCFTFYYVEKKDEPKSFQSASGLTDCSTYVEAEVRRSGSELNSQDVSDSGSTESLRRSAVPNMSQRPSNLRVFTVSELKSATKSFSRSVMLGEGGFGCVYLGLIRSVEDPSRRIEVAIKQLSKRGMQGHREWVTEVNVLGIVEHPNLVKLVGYCADDDERGIQRLLIYEYMPNRSVEDHLSHRSETSLSWNRRLKIAQDAARGLTYLHEEMDFQIIFRDFKSSNILLDENWNAKLSDFGLARLGPTDGLTHVSTAVVGTMGYASPEYVQTGRLTSKNDVWSYGVFLYELITGRRPLDRNRPRGEQKLLEWIRPYLSDAKKFQLILDPRLDKKQVIKSAQRLAIIANRCLVKNPKNRPKMSEILEMVNGIVEFSPSSSPQIPLRKAKVEASRDTEVNKKRTMDMKPVEGNWFARIWRPKLARTC* 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0839 436 PANTHER OS01G0588500 PROTEIN-RELATED 19 430 - -
Lja1g0839 436 Gene3D Phosphorylase Kinase; domain 1 70 183 - -
Lja1g0839 436 Gene3D Transferase(Phosphotransferase) domain 1 184 394 - -
Lja1g0839 436 CDD STKc_IRAK 104 382 - -
Lja1g0839 436 ProSitePatterns Protein kinases ATP-binding region signature. 104 132 IPR017441 GO:0005524
Lja1g0839 436 Pfam Protein tyrosine and serine/threonine kinase 103 377 IPR001245 GO:0004672|GO:0006468
Lja1g0839 436 SUPERFAMILY Protein kinase-like (PK-like) 74 379 IPR011009 -
Lja1g0839 436 PANTHER KINASE 1B 19 430 - -
Lja1g0839 436 MobiDBLite consensus disorder prediction 50 77 - -
Lja1g0839 436 ProSiteProfiles Protein kinase domain profile. 98 383 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0839 Lja-Chr1 8201736 8205307 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0839 13 408 Glycoside Hydrolase AT3G07070 38.424 1.68e-90 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Lja1g0839 PK_Tyr_Ser-Thr 2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0839 - - gsj:114400704 751.895
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0839 1 8201736 8205307 Lja1g0839 1 8201736 8205307 ECH
Lja1g0839 1 8201736 8205307 Lja5g2649 5 52934044 52939958 PCT