Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0830 ATGTCACCAGATTCTGAAGAGATAAAGACTATTGAGCAGTGGAAATGGTCTGAAATGCAAGGCCTTGAGCTTGTGAATGATGATTCTGCTGCCACAAAACCAATGGAAACAGGGGACTCTGTTTCCAAAACAGAGCACTCTGTTTCTAAAACAGAGGAGGGTCCTTCTTCTTCTTCTCAAGTTGAGGTTCTAAAGGAAATGGAGAACTCTGAACCTGTCAAAAATGGTTCTGTCAGTGGTGGAGAGAAGCATGAGGCTCTTCCCTCTGTTGGGTTCTTGGAGCTTTTCAGATTTGCTGATGGGTTGGATTGCATTCTCATGACAATTGGAACTTTTGGAGCAATTGTTCATGGTTGTTCTTTGCCTTTGTTTCTTCGGTTCTTTGCGGATCTTGTGAACTCTTTTGGGTCCAATGCTAATAACTTGGACAAGATGACCCAGGAAGTTGTCAAGTATGCATTTTACTTCTTGGTGGTTGGTGCTGCTATATGGGCATCTTCATGGGCAGAGATTTCATGTTGGATGTGGACTGGAGAGCGTCAATCAACAAAGATGAGAATCAAGTACCTGGAAGCTGCCTTGAGCCAGGACATTGAGTTCTTCGATACCGAGGTTCGAACATCAGATGTTGTTTTTGCCATCAACACTGATGCTGTCATGGTCCAAGATGCCATTAGTGAGAAGTTAGGCAATTTCATTCACTACATGGCCACATTTGTTTCTGGTTTTATTGTGGGTTTCACTGCTGTTTGGCAATTGGCTTTGGTCACCCTTGCTGTAGTCCCTATGATAGCTGTGATTGGAGGCATTCACACCACCACGTTGGCCAAGCTTTCCAGCAAAAGCCAGGAATCTCTTTCTCAAGCCGGCAACATTGTGGAACAGACGGTTGTGCAAATCAGAGTAGTGTTGGCCTTTGTTGGGGAATCAAGAGCAATGCAATCCTATTCATCAGCCTTGAAGGTTGCTCAGAAGCTTGGATACAAAACCGGGTTTGCAAAGGGATTGGGATTGGGTGCTACTTACTTTGTTGTTTTCTGTTGTTATGCACTTCTTCTGTGGTATGGAGGCTATCTGGTTAGGCACCACTACACCAATGGAGGACTTGCCATTGCAACCATGTTTGCTGTTATGATCGGTGGAATAGGTTTGGGGCAGTCTGCACCTAGCATGGCTGCATTTACAAAAGCTAAGGTTGCTGCAGCGAAGATTTTCCGTATAATTGATCACAAGCCTGGTATAGACAGAAACAATGAATCTGGCTTGGAATTGGAGACAGTCACTGGACTTGTGGAGCTGAAAAATGTAGACTTTTCTTACCCATCTAGGCCAGACGTTCAGATCCTCCATGATTTCTCCTTGAATGTGCCTGCTGGCAAGACCATAGCTTTGGTGGGTAGCAGTGGTTCTGGCAAGAGCACTATAGTCTCCCTCATTGAGAGATTCTATGACCCAACTTCAGGACAAGTTCTGCTAGATGGGCATGACATTAAAACATTGAAGCTTAGATGGTTGAGGCAGCAGATAGGACTGGTGAGCCAAGAGCCTGCTTTGTTTGCTACCACAATTAGGGAAAATATATTGTTGGGAAGGCCTGATGCAAGCCAGGTTGAGATTGAAGAAGCTGCCAGGGTTGCCAATGCACATTCCTTCATCATCAAACTTCCTGAAGGCTATGACACCCTGGTAGGAGAAAGAGGGCTGCAACTTTCTGGAGGGCAAAAACAGCGAATAGCAATAGCAAGGGCAATGCTTAAAAACCCAGCAATTCTTCTCCTAGATGAGGCAACAAGTGCATTGGACTCTGAGTCAGAAAAGCTGGTTCAGGAAGCCCTTGACAGGTTCATGATTGGCAGAACAACTCTTGTAATTGCGCATCGCCTCTCCACCATCCGCAAAGCTGATCTCGTAGCAGTACTTCAGCAAGGAAGTGTTTCAGAAATTGGAACTCATGATGAGCTCTTTTCCAAAGGTGAAAATGGAGTATATGCCAAGCTTATAAAGATGCAGGAGATGGCACATGAAACTGCCATGAATAATGCCAGAAAGAGTAGTGCACGGCCTTCAAGTGCCAGAAACTCAGTAAGCTCACCCATAATTGCTCGGAATTCTTCTTATGGCCGGTCACCATACTCGCGCAGGCTGTCTGATTTCTCCACATCTGATTTTAGTCTCTCCCTTGATGCATCACATCCAAATTACAGGCATGAAAAGCTTCCCTTCAAAGAACAAGCAAGTTCCTTTTGGAGACTTGCAAAAATGAACTCTCCTGAATGGCTTTATGCTTTGATTGGCTCTATAGGCTCTATTGTTTGTGGATCCCTCAGTGCATTCTTTGCTTATGTTCTTAGCGCTGTCCTTAGTGTCTATTACAGTCCAGACCACAGACACATGATCCGCGAAATTGAAAAGTACTGCTACTTGTTGATTGGGCTGTCATCAACTGCACTTCTCTTCAACACATTGCAACACTTCTTCTGGGATATTGTTGGGGAGAATCTTACTAAAAGAGTGAGGGAAAAAATGCTGACGGCGGTGCTCAAAAATGAAATGGCATGGTTTGATCAGGAGGAAAATGAAAGTGCCAGGATCTCTGCAAGGCTGGCTCTTGATGCCAACAATGTCAGATCAGCCATTGGAGACAGAATTTCAATAATTGTGCAGAACACTGCACTTATGCTAGTTGCTTGCACTGCAGGTTTTGTGTTGCAGTGGCGCCTTGCCCTTGTTCTCATAGCTGTCTTCCCTGTTGTTGTTGCAGCCACTGTGTTGCAGAAAATGTTCATGACTGGTTTTTCTGGTGACCTGGAAGCTGCTCATGTCAAGGCTACACAACTAGCTGGGGAGGCTATAGCCAATGTAAGAACTGTTGCAGCCTTCAATTCAGAAGCAAAAATTGTTGGCCTTTTCACCTCAAACCTTGAAGCTCCCTTACAAAGGTGCTTTTGGAAGGGGCAGATTTCTGGAAGTGGATATGGGATAGCTCAGTTTGCACTTTATGCTTCCTATGCACTTGGACTTTGGTATGCTTCTTGGCTTGTAAAGCATGGAATCTCTGACTTCTCCAAAACAATCAGAGTTTTCATGGTCCTCATGGTATCTGCCAATGGTGCTGCTGAAACATTAACACTTGCTCCTGACTTCATCAAGGGAGGTAGAGCCATGAAGTCAGTCTTTGATCTCCTTGACCGGAGAACCGAAATTGAGCCGGATGACCAAGATGCTACTCCGGTTCCTGATCGTCTTCGCGGGGAAGTTGAACTTAAGCACGTGGACTTCTCTTATCCCACTCGCCCAGATATGCCAGTCTTTAGAGACCTTAATCTTCGAGCTAGAGCTGGAAAAACTCTTGCCCTTGTAGGACCTAGTGGCTGTGGTAAGAGCTCAGTAATTGCACTCATACAGAGATTCTATGATCCAACCTCTGGTAGGGTCATGATTGATGGGAAAGACATCAGAAAGTACAACCTCAAGTCCTTAAGAAGACACATTTCTGTGGTACCTCAAGAGCCATGCCTTTTTGCTACTACCATTTATGAAAACATTGCTTATGGACACGACTCAGCATCTGAAGCTGAGATCATTGAAGCTGCAACTCTTGCCAATGCTCACAAGTTCATATCTGGTCTTCCAGATGGATACAAGACCTTTGTCGGCGAGCGAGGTGTTCAGCTGTCAGGGGGACAAAAGCAAAGAATTGCGGTTGCTCGCGCTTTTGTGAGGAAGGCCGAGCTTATGCTTCTTGATGAGGCGACGAGTGCGCTTGATGCTGAGTCTGAGAGGTCTGTTCAGGAGGCTCTAGACAAAGCCTCTTCAGGCAAAACAACTATCATTGTTGCACACAGGTTATCAACTATAAGAAATGCTAACATGATTGCTGTGATTGATGATGGGAAAGTGGCTGAGCAAGGTTCACATTCACATTTGTTGAAAAATTGCCCGGATGGGATTTATGCGCGCATGATTCAATTGCAAAGGTTCTCACACAGCCAAGTCATCGGGATGGCCTCTGGTTCAAGTTCTTCAACAAGACCAAAAGATGGGGAAAAAGAAGGCTAG 4059 0.4513 MSPDSEEIKTIEQWKWSEMQGLELVNDDSAATKPMETGDSVSKTEHSVSKTEEGPSSSSQVEVLKEMENSEPVKNGSVSGGEKHEALPSVGFLELFRFADGLDCILMTIGTFGAIVHGCSLPLFLRFFADLVNSFGSNANNLDKMTQEVVKYAFYFLVVGAAIWASSWAEISCWMWTGERQSTKMRIKYLEAALSQDIEFFDTEVRTSDVVFAINTDAVMVQDAISEKLGNFIHYMATFVSGFIVGFTAVWQLALVTLAVVPMIAVIGGIHTTTLAKLSSKSQESLSQAGNIVEQTVVQIRVVLAFVGESRAMQSYSSALKVAQKLGYKTGFAKGLGLGATYFVVFCCYALLLWYGGYLVRHHYTNGGLAIATMFAVMIGGIGLGQSAPSMAAFTKAKVAAAKIFRIIDHKPGIDRNNESGLELETVTGLVELKNVDFSYPSRPDVQILHDFSLNVPAGKTIALVGSSGSGKSTIVSLIERFYDPTSGQVLLDGHDIKTLKLRWLRQQIGLVSQEPALFATTIRENILLGRPDASQVEIEEAARVANAHSFIIKLPEGYDTLVGERGLQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADLVAVLQQGSVSEIGTHDELFSKGENGVYAKLIKMQEMAHETAMNNARKSSARPSSARNSVSSPIIARNSSYGRSPYSRRLSDFSTSDFSLSLDASHPNYRHEKLPFKEQASSFWRLAKMNSPEWLYALIGSIGSIVCGSLSAFFAYVLSAVLSVYYSPDHRHMIREIEKYCYLLIGLSSTALLFNTLQHFFWDIVGENLTKRVREKMLTAVLKNEMAWFDQEENESARISARLALDANNVRSAIGDRISIIVQNTALMLVACTAGFVLQWRLALVLIAVFPVVVAATVLQKMFMTGFSGDLEAAHVKATQLAGEAIANVRTVAAFNSEAKIVGLFTSNLEAPLQRCFWKGQISGSGYGIAQFALYASYALGLWYASWLVKHGISDFSKTIRVFMVLMVSANGAAETLTLAPDFIKGGRAMKSVFDLLDRRTEIEPDDQDATPVPDRLRGEVELKHVDFSYPTRPDMPVFRDLNLRARAGKTLALVGPSGCGKSSVIALIQRFYDPTSGRVMIDGKDIRKYNLKSLRRHISVVPQEPCLFATTIYENIAYGHDSASEAEIIEAATLANAHKFISGLPDGYKTFVGERGVQLSGGQKQRIAVARAFVRKAELMLLDEATSALDAESERSVQEALDKASSGKTTIIVAHRLSTIRNANMIAVIDDGKVAEQGSHSHLLKNCPDGIYARMIQLQRFSHSQVIGMASGSSSSTRPKDGEKEG* 1353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0830 1352 CDD ABC_6TM_Pgp_ABCB1_D2_like 752 1068 - -
Lja1g0830 1352 Gene3D ABC transporter type 1, transmembrane domain 94 683 IPR036640 GO:0005524|GO:0016021
Lja1g0830 1352 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 107 1329 IPR039421 -
Lja1g0830 1352 SUPERFAMILY ABC transporter transmembrane region 95 415 IPR036640 GO:0005524|GO:0016021
Lja1g0830 1352 Pfam ABC transporter transmembrane region 764 1033 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lja1g0830 1352 Pfam ABC transporter transmembrane region 107 380 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lja1g0830 1352 ProSitePatterns ABC transporters family signature. 1225 1239 IPR017871 GO:0005524
Lja1g0830 1352 ProSitePatterns ABC transporters family signature. 570 584 IPR017871 GO:0005524
Lja1g0830 1352 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 763 1050 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lja1g0830 1352 CDD ABC_6TM_Pgp_ABCB1_D1_like 107 404 - -
Lja1g0830 1352 MobiDBLite consensus disorder prediction 1333 1352 - -
Lja1g0830 1352 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1086 1322 IPR003439 GO:0005524
Lja1g0830 1352 Pfam ABC transporter 1105 1253 IPR003439 GO:0005524
Lja1g0830 1352 Gene3D ABC transporter type 1, transmembrane domain 742 1051 IPR036640 GO:0005524|GO:0016021
Lja1g0830 1352 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 431 667 IPR003439 GO:0005524
Lja1g0830 1352 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1077 1325 IPR027417 -
Lja1g0830 1352 Gene3D - 421 671 IPR027417 -
Lja1g0830 1352 Gene3D - 1075 1326 IPR027417 -
Lja1g0830 1352 CDD ABC_MTABC3_MDL1_MDL2 1086 1325 - -
Lja1g0830 1352 CDD ABC_MTABC3_MDL1_MDL2 431 670 - -
Lja1g0830 1352 SMART AAA_5 1113 1305 IPR003593 -
Lja1g0830 1352 SMART AAA_5 458 644 IPR003593 -
Lja1g0830 1352 Pfam ABC transporter 449 598 IPR003439 GO:0005524
Lja1g0830 1352 Gene3D ABC transporter type 1, transmembrane domain 1052 1329 IPR036640 GO:0005524|GO:0016021
Lja1g0830 1352 SUPERFAMILY ABC transporter transmembrane region 750 1070 IPR036640 GO:0005524|GO:0016021
Lja1g0830 1352 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 422 670 IPR027417 -
Lja1g0830 1352 MobiDBLite consensus disorder prediction 51 65 - -
Lja1g0830 1352 MobiDBLite consensus disorder prediction 25 82 - -
Lja1g0830 1352 PANTHER ABC TRANSPORTER B FAMILY MEMBER 1 107 1329 - -
Lja1g0830 1352 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 109 396 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0830 Lja-Chr1 8095579 8103838 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0830 83 1347 Calmodulin-binding Proteins AT2G36910 88.389 0.0 2298
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0830 K05658 - gmx:100814667 2351.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0830 1 8095579 8103838 Lja1g0830 1 8095579 8103838 ECH