Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0829 ATGGGCAGAGCTCCATGCTGTGACAAAGCAAATGTAAAGAGAGGGCCATGGTCTCCTGAAGAAGATGCAAAGCTAAAGGAGTTCATAGAGAAAAATGGAACTGGGGGAAACTGGATTGCCCTCCCCCAAAAAGTTGGTTTGAAAAGATGTGGCAAGAGCTGTAGACTTAGATGGCTTAATTATCTTAGACCCAACATTAAGCATGGGGAGTTCTCTGATGCAGAAGATAAAATAATCTGCAGCCTCTTTGCTAGCATTGGAAGCAGGTGGTCAATAATAGCATCTCGGCTGCCAGGGAGGACTGACAATGATATAAAGAACTACTGGAACACGAAGCTGAAGAAAAAAATGATGATGGCCATGAATCATTCAGCAGTGAGGAAACCTCCTCAACAAGCTACATTTTTATCTATCCTCCAAAATTCAACACCATCTTCTTCTAATTCATTTTTTCAAGCACAAGAAAGTTTCATCCATCCCCCTCAGAAGTTCCAATTTCAATTTAGCAGTAACTCCTTTGTGTTTGGGGGTGAAACTACTAGTTGTAGCAGCTCTTCTGATGGGAGCTGTAACAACAAGACCAGTCATGTCACAGACCCAGACCTTGGATATGGTGAAGGGTGTGTTGGTTCAACTTTTATGGAGCAAATTGGTGGGGTTGATTACCTATACAATGGGGTGGAAGATACCCAAAAGTTGATGTTCAACAATGGTGATGGTGTAAGTGGGTGGACAGAGAAACAAAATGGATTGTGGGAAGAAAATCCAATGGATAATGGTCTAGAAGAAATTAAGGAGCTAATTAGCACAAGTAGTTGCAACAACTTTTTGTTTGGTGACAAGAAGACAGAGGAAAAGGTCATGTACTACTGA 873 0.4158 MGRAPCCDKANVKRGPWSPEEDAKLKEFIEKNGTGGNWIALPQKVGLKRCGKSCRLRWLNYLRPNIKHGEFSDAEDKIICSLFASIGSRWSIIASRLPGRTDNDIKNYWNTKLKKKMMMAMNHSAVRKPPQQATFLSILQNSTPSSSNSFFQAQESFIHPPQKFQFQFSSNSFVFGGETTSCSSSSDGSCNNKTSHVTDPDLGYGEGCVGSTFMEQIGGVDYLYNGVEDTQKLMFNNGDGVSGWTEKQNGLWEENPMDNGLEEIKELISTSSCNNFLFGDKKTEEKVMYY* 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0829 290 SMART sant 13 64 IPR001005 -
Lja1g0829 290 SMART sant 67 115 IPR001005 -
Lja1g0829 290 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Lja1g0829 290 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 66 IPR017930 -
Lja1g0829 290 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Lja1g0829 290 CDD SANT 16 62 IPR001005 -
Lja1g0829 290 Gene3D - 69 135 - -
Lja1g0829 290 PANTHER OS09G0431300 PROTEIN 1 275 - -
Lja1g0829 290 PANTHER TRANSCRIPTION FACTOR RAX3 1 275 - -
Lja1g0829 290 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Lja1g0829 290 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Lja1g0829 290 Gene3D - 7 68 - -
Lja1g0829 290 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 117 IPR017930 -
Lja1g0829 290 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Lja1g0829 290 CDD SANT 70 111 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0829 Lja-Chr1 8065968 8068149 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0829 1 118 MYB Transcription Factor Family AT5G57620 84.746 3.32e-74 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lja1g0829 Myb_DNA-binding 4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0829 K09422 - gmx:778084 379.407
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0829 1 8065968 8068149 Lja1g0829 1 8065968 8068149 ECH