Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0821 ATGGCGAGTCCGTCGGAATTTCACCGCAACGAAATCGCCGCCGCACATCTCACCGCCGCAGATTTTGGACTCTCCGACGACGATGAAGAGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGACGAAGAGGATGATGAAGAAGACGAAGATGAAGACTACATTCCCGTTGCACCGTCGCATAGGGTTTCTCCCAACGTTCACCAGAACCCTACCTCCGACTCCGTTGAAGTAATCCTTATCCCTGATTCCGAACAGCAGAATTACTCTGAAGAGGATGGGAATAAACGCCGGAGGATCGAAGAAGGCGAGGCTCCCACTTCGTCACTCGGCAGTCAAGGGAACGAGCTCACCGGCACCGACATTGACGGCCTCGTTTGCCCTATTTGCATGGACGCTTGGACCAATAACGGCGAACATCATATCTGTTGTCTTCCTTGTGGGCATGTATATGGCATGTCTTGCATCAATAAATGGCTTCAACATCGAAAAAGTTCCGGCAAGTGTCCTCAATGTAAAAGTAAATGCTCGTTGAAGGATGTGAGGAAACTCTACGCTTCGCGATTAGTTGCTGTAGATGGAAACCTTCATAAGAGAATTAGGTCACTTGAGGACAAATGTTCTGGCCTTGAAAGCAAGGATGGTCAATGGAACAAGAAAGAAGCTGAATGGAAGAAGAGAGTAGCTACCCTTCAAAGTAAGGATGGTAATTGGCACAAGAAAGAAGCTGAATGGAAGAAGAGAGAAACTGTATTGTATCATGAAGTTCAGAAGCTCACAGAGAGAAACACTTATTTGGAACAGCTGCTACTACTAGATGTGCAGAACAGGCAATCTGAAATGATGGATGGCAATATGAAACCTCAACGGAGATATGAATGTGAGCGCAACTGGAGCCCAAAGTCCCATGGAAAAGGATCGAAGTTCTGTGGAGAAGAACCTTTTTGCAATTTTGAATTTCGGGAAGCATTCCGTGTGGATGGTGCACGCCTATTTGATATGGACACTTCTAATGATATTTTATTAATTGCACGAAAGCCAAAAGCAATTGGTGGAGAACACTTGCTAACCAAAATGAGCTTGATATCTCCATTTGAAATGGAAGATATCGTACTGCCTTCCACTACAAATGCTATTAGAGACCTGCATATTTCTCCTTCTGGCAATAGACTGGCTCTCTATGCTTCACTAGGGAAGAAATTATCAGTGCTCAGCTTGGACAGTAGCAACATTGTTGTCAATTATGATCTACAGATTCCTGCTTGGTCATGCTCATGGGATCTCAACAGTACGAATTATATATATGCGGGACTACAGAATGGATCTATTATGGTGTTTGATTTGCGCCAAACTTCAGGACCTGTAAAATCTTTATTTGGCTTGAGTAACAAACCTGTTCATACGGTACAATCTCTTGCACAAACTTTATGTCTTCCTTCTGGTGCTAGAACCATCCTATCTGCATCTTCCGGTGGCATTTGTCAGTGGAACATTGATTCTGAAGCAGGGCCGTTTGTGGTTCCTGAAACTGACAATCAAGGAGTTTGTATTTCTCTTGCCTATTGTTCTAGTAGTGATGACATTGTTGGTTCATACCGTCCAACGTTTGACATGTCGATGGACGTGTCTCATTCTCAACCATTACTGACTCCTTCTCAAGTTATTGGACAAGGAGTACAGGGCTGTCATGTCTTGTTCAAGGGAATGGGCAGTCATCATTTCCAGAAGACGGGTTCCACACATGCGGATGTGAGTAAAAGTCTACTACCTAAATGTGTAATTATAGACATGGAGAATCAGAGTAGATTGTTTGCATCTAGAGATGAAGTTACAAATGATTTGGTCTTGTACGAGTTGCCATCTTTTAGAGTTCATCAGCAATTCAAAATGCCAGCTCAGTCCCGTGATGTTAGGTACTCAACTAGCCATTGGGCACTTGGTTGTTTAAGTGAGAACTCAGTACAACTTTTCCATGCCAAATTCTCGTAA 2025 0.4331 MASPSEFHRNEIAAAHLTAADFGLSDDDEEEEEEEEEEEEEEEEEEEEEEEEEDEEDDEEDEDEDYIPVAPSHRVSPNVHQNPTSDSVEVILIPDSEQQNYSEEDGNKRRRIEEGEAPTSSLGSQGNELTGTDIDGLVCPICMDAWTNNGEHHICCLPCGHVYGMSCINKWLQHRKSSGKCPQCKSKCSLKDVRKLYASRLVAVDGNLHKRIRSLEDKCSGLESKDGQWNKKEAEWKKRVATLQSKDGNWHKKEAEWKKRETVLYHEVQKLTERNTYLEQLLLLDVQNRQSEMMDGNMKPQRRYECERNWSPKSHGKGSKFCGEEPFCNFEFREAFRVDGARLFDMDTSNDILLIARKPKAIGGEHLLTKMSLISPFEMEDIVLPSTTNAIRDLHISPSGNRLALYASLGKKLSVLSLDSSNIVVNYDLQIPAWSCSWDLNSTNYIYAGLQNGSIMVFDLRQTSGPVKSLFGLSNKPVHTVQSLAQTLCLPSGARTILSASSGGICQWNIDSEAGPFVVPETDNQGVCISLAYCSSSDDIVGSYRPTFDMSMDVSHSQPLLTPSQVIGQGVQGCHVLFKGMGSHHFQKTGSTHADVSKSLLPKCVIIDMENQSRLFASRDEVTNDLVLYELPSFRVHQQFKMPAQSRDVRYSTSHWALGCLSENSVQLFHAKFS* 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0821 674 MobiDBLite consensus disorder prediction 75 100 - -
Lja1g0821 674 SMART ring_2 139 184 IPR001841 -
Lja1g0821 674 MobiDBLite consensus disorder prediction 1 129 - -
Lja1g0821 674 MobiDBLite consensus disorder prediction 101 116 - -
Lja1g0821 674 Gene3D - 341 552 IPR015943 GO:0005515
Lja1g0821 674 ProSiteProfiles Zinc finger RING-type profile. 139 185 IPR001841 -
Lja1g0821 674 MobiDBLite consensus disorder prediction 24 66 - -
Lja1g0821 674 CDD mRING-C3HGC3_RFWD3 135 185 - -
Lja1g0821 674 PANTHER RFWD3 PROTEIN 29 669 IPR037381 GO:0004842|GO:0005634|GO:0016567|GO:0036297
Lja1g0821 674 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 124 249 IPR013083 -
Lja1g0821 674 PANTHER E3 UBIQUITIN-PROTEIN LIGASE 29 669 - -
Lja1g0821 674 SUPERFAMILY RING/U-box 134 191 - -
Lja1g0821 674 SUPERFAMILY WD40 repeat-like 380 536 IPR036322 GO:0005515
Lja1g0821 674 Coils Coil 24 65 - -
Lja1g0821 674 Pfam Ring finger domain 139 185 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0821 Lja-Chr1 7986485 7993083 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0821 138 223 C3H Transcription Factor Family AT4G01270 36.364 2.11e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0821 K15691 - lja:Lj1g3v4604360.2 779.245