Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0816 ATGTCTTGCATCAAGAGATGGCTTCAACGCAACCACGGTTCAGGCAAGTGTCCTCAATGTAATGAGACATGTTCGTTGGTAGATGTGAGGAGACTCTATGCTTCCGTAGTAGTTGCGGATGATGAGAAGAGAATTGCGTCTCTTGAGGCCAAATTTTCTCCTTTTGATCAACTTATTAAGTCCATTGAACATAGACAGAGAAGACTAGAGGAGAATCTCAGGAAGCAAGAGCAAGAATTGAGTAATTTAAGAGTGTTAGGTGGATTGCAGATTGAGGACACAGTACTAGAGGAGAATCTCAGGAAGCAAGAGCATGAATTGAGAGATTTAAGAGTGTTTTGTAGAGAGCAGATTGAACGGGATGTGGAGTATCGCTTAAAGAAAATATATAGAGTAGGTGAAGTTGAGAATTCTGGCATAGTTTTTTCTTCGTCTAGGAATGTGATAGTTTGTCCTGGAGTGGCACAATGTACCGAGACATGTTCGTTGAAAGATGTGAGGAAACTCTATGCTTCTGTAGTAGCTGTGGTCAATGAAGAATCTAATAAGAGAATTACGCATCTTGAGGCCAAATTTGAGGCCAAATCTGCTTCTCTTGATCAACTTCTTAAGATCTGTTTATTCTGTATCTCCATCTTTGACCAAAAAGAGTTGTTGAATTTGATTTGCACGGTGATGGAGGATTCAGGAATTGGAAGTTGGTGTTCTGATGAAGGTTATTCATCAAATGGTGTAGAGAAAAGCAATGGAGTAGCTGCTGGAATTGTTTCACCACCCACACCCACCCAGTTTGAGTTAGTTGGTGAGGATGAAACAGGTGAAGGAGTGGCTGTCAATAGTATGGATGACGTCGCACATACTTTGTGGGATTGTATGAATGCGACTGATTTTATGAAGTATCACTTCCTTAATCGGCAGGTAGCATTTGATTTCTACAACTTCTATGCTAGAGTTAAGGGCTTCTCAATAAGGAAAAGCAAGGTTTTGAGAAACAAAAAAGGTGATATTGTGCGGCAAGACTTAGTGTGTCACAAGGAAGGTTTTCGTGAAGAGAAAAATAGAATGAGGGCAAATCGTAAAAGGGAAACAAAGGTGGAGACAAGGTGTGGGTGCAGTGCAAAAAATGAGGATTAG 1134 0.4065 MSCIKRWLQRNHGSGKCPQCNETCSLVDVRRLYASVVVADDEKRIASLEAKFSPFDQLIKSIEHRQRRLEENLRKQEQELSNLRVLGGLQIEDTVLEENLRKQEHELRDLRVFCREQIERDVEYRLKKIYRVGEVENSGIVFSSSRNVIVCPGVAQCTETCSLKDVRKLYASVVAVVNEESNKRITHLEAKFEAKSASLDQLLKICLFCISIFDQKELLNLICTVMEDSGIGSWCSDEGYSSNGVEKSNGVAAGIVSPPTPTQFELVGEDETGEGVAVNSMDDVAHTLWDCMNATDFMKYHFLNRQVAFDFYNFYARVKGFSIRKSKVLRNKKGDIVRQDLVCHKEGFREEKNRMRANRKRETKVETRCGCSAKNED* 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0816 377 PANTHER E3 UBIQUITIN-PROTEIN LIGASE 1 83 - -
Lja1g0816 377 PANTHER E3 UBIQUITIN-PROTEIN LIGASE 151 193 - -
Lja1g0816 377 Pfam FAR1 DNA-binding domain 310 374 IPR004330 -
Lja1g0816 377 Coils Coil 59 86 - -
Lja1g0816 377 PANTHER RFWD3 PROTEIN 1 83 IPR037381 GO:0004842|GO:0005634|GO:0016567|GO:0036297
Lja1g0816 377 PANTHER RFWD3 PROTEIN 151 193 IPR037381 GO:0004842|GO:0005634|GO:0016567|GO:0036297
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0816 Lja-Chr1 7940736 7952283 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Lja1g0816 FAR1 1.8e-12 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0816 - K15691 lja:Lj0g3v0157659.1 184.111