Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0809 ATGTTGGATCAGTCTCTCCAACATCAAGTCAGCTTATTGAAACCTTTCGGAATGTGCTCACACTACAAGAGGAGATGCAAGATCGTAGCACCCTGTTGCAATGAAATTTTCGACTGCAGACATTGTCATAATGAATCTAAGAATTCGATTGAACTTGATCCTATTGACAGGCATGACATTCCCCACCATGATGTGAAGAGGGCTGTCTGTTCCTTGTGCAGTACAGAGCAAGAGTTATATAAATGTCATGTTCAGCAAATGTGCATTCACTGTGGTGTTTGCATGGGGAGATACTTCTGCTCCAAATGCAACTTCTTTGATGATGATGTATCAAAAAATCAATACCATTGTGATGGATGTGGTATCTGCAGAACTGGAGGTGAAGAGAACTTTTTTCACTGTAACGGATGTGGTCAATGTTGTTACTCATTGTTATTGAAGGATTCTCACCAAAGTATTGAAAAAGCAATGCATCACAATTGCGCGGTTTACATTACTGTCTTGCCATGTGGTCACACCATACATTTGGGATGTGTGAGAGAGATGGAACAACATTTGCAGTATTCATGCCCGGTTTGCTCAAAGTCTTTTTGTGATATGTCACGCGTATGGAAGAAACTAGATGAGGAGGTTGCATCAACACCTATGCCCGAAATGTATCGAAATAAGATGGTTTGGATTCTTTGCAATGACTGCGGGACAACGCCTGAAGTAAGTTTTCATCTTGTGGCACACAAGTGCCTCAAATGCAAGTCCTACAACACAAGAAAGACACAAGGTGCTCCTGCTTCGTGCTCATCGAGGATTGGAGAGGTGGTGAGATAG 825 0.4206 MLDQSLQHQVSLLKPFGMCSHYKRRCKIVAPCCNEIFDCRHCHNESKNSIELDPIDRHDIPHHDVKRAVCSLCSTEQELYKCHVQQMCIHCGVCMGRYFCSKCNFFDDDVSKNQYHCDGCGICRTGGEENFFHCNGCGQCCYSLLLKDSHQSIEKAMHHNCAVYITVLPCGHTIHLGCVREMEQHLQYSCPVCSKSFCDMSRVWKKLDEEVASTPMPEMYRNKMVWILCNDCGTTPEVSFHLVAHKCLKCKSYNTRKTQGAPASCSSRIGEVVR* 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0809 274 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RZFP34 16 272 - -
Lja1g0809 274 SUPERFAMILY Zinc hairpin stack 96 153 IPR037275 -
Lja1g0809 274 Pfam Zinc-ribbon 198 256 IPR039512 -
Lja1g0809 274 ProSiteProfiles Zinc finger CHY-type profile. 12 93 IPR008913 GO:0008270
Lja1g0809 274 ProSiteProfiles Zinc finger CTCHY-type profile. 95 160 IPR017921 -
Lja1g0809 274 Pfam CHY zinc finger 19 105 IPR008913 GO:0008270
Lja1g0809 274 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 16 272 - -
Lja1g0809 274 ProSiteProfiles Zinc finger RING-type profile. 137 194 IPR001841 -
Lja1g0809 274 SUPERFAMILY CHY zinc finger-like 13 95 IPR037274 GO:0008270
Lja1g0809 274 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 164 204 IPR013083 -
Lja1g0809 274 Gene3D - 222 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0809 Lja-Chr1 7881893 7888059 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0809 19 267 C2H2 Transcription Factor Family AT3G18290 35.606 2.56e-39 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0809 K10144 - zju:107431972 453.366