Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0808 ATGCTGCTCCTCCAAACAACTTGCATTGTGCTCATCTCTGTTCTGGGCTTGTTTTCACAGCTTGGAACAGCAATGCTGAACCTAACTCTCCCCGGAGCACACCCTGACCCTGAAGCTGTTGCTCACGAAGTTCACAGGAAGGTGAATGCTTCAATTGCAAGAAGGGAAATGCTGGCGGTTTCATGGGAGAAAGATGAGTCCGCGTGTGCAACAGGGAACCCCATTGATGATTGCTGGAAATGCGACCCCGACTGGCCGAACAATCGACAGAGGCTAGCGGACTGCGTGATCGGGTTCGGGCAGTACGCGAAGGGAGGAAAAGGTGGGGAGTTTTATCTGGTGACGGATTCCTCCGACAACGATGTGGTTAACCCGAAACCGGGGACGCTGAGGTATGGGGTGATACAGAATGAGCCTTTGTGGATAGTGTTTCCTAGTAATATGATGATAAAGCTGTCTCAGGAGCTGATCTTCAACAGCTACAAGACAATTGATGGTCGCGGTGCTGATGTGCACATTGTGGGAGGAGGGTGCATCACTTTGCAGTATATAAGCAATGTCATCATACATAACATTCACATTCATCATTGTCATCCCTCGGGTAACACGAACGTGCGGTCAAGCCCAGAGCACTACGGTTACAGAACAGAATCGGATGGTGATGGAATATCCATATTTGGAGCAAAGGATATATGGATCGACCATTGCACCCTCTCACGGTGCAAGGACGGGCTCATCGACGCGGTGATGGGTTCCACAGGGATAACCATCTCCAACAACTACATGTCCCACCACAACGAGGTCATGCTCCTCGGACACAGCGATGACTACCTCCCTGACTCTGGCATGCAGGTCACCATCGCCTTCAACCACTTCGGCCAAAACCTCGTCCAGAGAATGCCCCGGTGCCGGAGGGGCTACATCCACGTCGTTAACAATGAGTTCACCCAGTGGGAGATGTACGCCATCGGCGGCAGCGGGAACCCCACCATAAATAGCCAGGGGAACCGATATAGTGCGCCTTCGAACCCTTTTGCTAAGGAGGTTACAAAGAGGGTAGAGACCGAGAAGGATAAGTGGAAAGGGTGGAATTGGAGGTCAGAAGGTGATGTTTTGGTGAATGGAGCATTTTTTGTGACATCAGGGGAAGTTCTTGAGGTTAAGTACGAGAAGGCTTACAGTGTTGAACCGAAGTCCGCTGATCGGATTGCTCTGCTTACCATGTATTCAGGTGTTCTCGGTGTTGCCAGGGACAATAATCTGGGAATGTGGAGCAGAGGACCCGAAAGTGAGGGTGATGGCGGTTCAGAGTTTGGCCTGATGTACTCCGACGATATGTCGGGGGGTGGAGGAGCAGTGCTACCACTACGTTCATTTCCTTTTACTCTTGGAATGTGCTTCTTGTCCTGGAAAATAATAATACCGTTAACATTTATTCTATGA 1443 0.5045 MLLLQTTCIVLISVLGLFSQLGTAMLNLTLPGAHPDPEAVAHEVHRKVNASIARREMLAVSWEKDESACATGNPIDDCWKCDPDWPNNRQRLADCVIGFGQYAKGGKGGEFYLVTDSSDNDVVNPKPGTLRYGVIQNEPLWIVFPSNMMIKLSQELIFNSYKTIDGRGADVHIVGGGCITLQYISNVIIHNIHIHHCHPSGNTNVRSSPEHYGYRTESDGDGISIFGAKDIWIDHCTLSRCKDGLIDAVMGSTGITISNNYMSHHNEVMLLGHSDDYLPDSGMQVTIAFNHFGQNLVQRMPRCRRGYIHVVNNEFTQWEMYAIGGSGNPTINSQGNRYSAPSNPFAKEVTKRVETEKDKWKGWNWRSEGDVLVNGAFFVTSGEVLEVKYEKAYSVEPKSADRIALLTMYSGVLGVARDNNLGMWSRGPESEGDGGSEFGLMYSDDMSGGGGAVLPLRSFPFTLGMCFLSWKIIIPLTFIL* 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0808 480 PANTHER PECTATE LYASE 18-RELATED 6 430 IPR045032 GO:0030570
Lja1g0808 480 Pfam Pectate lyase 156 336 IPR002022 -
Lja1g0808 480 PRINTS Pollen allergen Amb family signature 299 318 IPR018082 -
Lja1g0808 480 PRINTS Pollen allergen Amb family signature 95 112 IPR018082 -
Lja1g0808 480 PRINTS Pollen allergen Amb family signature 219 240 IPR018082 -
Lja1g0808 480 PRINTS Pollen allergen Amb family signature 363 387 IPR018082 -
Lja1g0808 480 PRINTS Pollen allergen Amb family signature 392 415 IPR018082 -
Lja1g0808 480 PRINTS Pollen allergen Amb family signature 119 144 IPR018082 -
Lja1g0808 480 PRINTS Pollen allergen Amb family signature 155 171 IPR018082 -
Lja1g0808 480 PRINTS Pollen allergen Amb family signature 321 340 IPR018082 -
Lja1g0808 480 PANTHER PECTATE LYASE 12-RELATED 6 430 - -
Lja1g0808 480 SMART amb_all 147 344 IPR002022 -
Lja1g0808 480 SUPERFAMILY Pectin lyase-like 68 384 IPR011050 -
Lja1g0808 480 Gene3D - 72 414 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0808 Lja-Chr1 7873798 7876482 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0808 2 450 Polysaccharide Lyase AT3G53190 76.549 0.0 688
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0808 K01728 - gmx:100775595 807.364
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0808 1 7873798 7876482 Lja1g0808 1 7873798 7876482 ECH