Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0802 ATGCCGATCCGCAACATCGCCATCGGTGCCCCTCAGGAGGCAACCCACCCAGACACCTTGAGGTCAGCCTTGGCTGAGTTCATCTCCACCTTCATCTTCGTCTTCGCCGGCTCCGGTTCCGGAATCGCCTACAACAAACTCACCGACGACGGCGCCGCCACCCCCGCCGGCCTCATCTCCGCCTCCATCGCCCACGCATTCGCCCTCTTCGTCGCCGTCTCCATCAGCGCCAACATCTCCGGCGGCCACGTCAACCCCGCCGTCACCTTCGGCCTCTTCGTCGGCGGTAACATCTCCTTCCTCCGCGGTGTCATCTACATCATCGCTCAGCTTCTCGGATCCATCGTCGCCTCCTTGCTCCTCGCCTTCGTCACCGGACTCGCTGTACCTGCTTTCGGTCTTTCAGCTGGAGTTGGAGTTGGGAACGCGTTGGTGTTGGAGATCGTGATGACCTTTGGATTGGTGTACACAGTTTACGCCACAGCCGTTGATCCCAAGAAGGGTAGTTTGGGAACTATTGCACCTATTGCTATTGGTTTCATTGTTGGTGCTAACATTTTGTTGGGTGGGGCATTCGACGGAGCATCCATGAACCCCGCCGTGTCATTCGGACCAGCCGTCGTGAGCTGGAGCTGGTCTAACCACTGGATCTACTGGGTCGGACCACTTGTTGGTGGTGGTATTGCTGGACTTATCTATGAGGTGGTTTTCATTGGCAGCCAAACCCATGAACAGCTTCCTACTACTGACTACTAG 756 0.5714 MPIRNIAIGAPQEATHPDTLRSALAEFISTFIFVFAGSGSGIAYNKLTDDGAATPAGLISASIAHAFALFVAVSISANISGGHVNPAVTFGLFVGGNISFLRGVIYIIAQLLGSIVASLLLAFVTGLAVPAFGLSAGVGVGNALVLEIVMTFGLVYTVYATAVDPKKGSLGTIAPIAIGFIVGANILLGGAFDGASMNPAVSFGPAVVSWSWSNHWIYWVGPLVGGGIAGLIYEVVFIGSQTHEQLPTTDY* 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0802 251 Gene3D Glycerol uptake facilitator protein. 4 251 IPR023271 -
Lja1g0802 251 CDD MIP 21 236 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja1g0802 251 Pfam Major intrinsic protein 14 233 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja1g0802 251 PANTHER AQUAPORIN TIP1-1 1 251 - -
Lja1g0802 251 ProSitePatterns MIP family signature. 83 91 IPR022357 -
Lja1g0802 251 TIGRFAM MIP: MIP family channel proteins 25 233 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja1g0802 251 SUPERFAMILY Aquaporin-like 13 240 IPR023271 -
Lja1g0802 251 PANTHER AQUAPORIN-8 1 251 IPR034294 -
Lja1g0802 251 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja1g0802 251 PRINTS Major intrinsic protein family signature 65 89 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja1g0802 251 PRINTS Major intrinsic protein family signature 102 121 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja1g0802 251 PRINTS Major intrinsic protein family signature 146 164 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja1g0802 251 PRINTS Major intrinsic protein family signature 179 201 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja1g0802 251 PRINTS Major intrinsic protein family signature 216 236 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0802 Lja-Chr1 7767857 7769147 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0802 1 251 Major Intrinsic Protein MIP AT2G36830 80.159 3.99e-143 399
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0802 K09873 - gmx:100527509 451.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0802 1 7767857 7769147 Lja1g0802 1 7767857 7769147 ECH