Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0801 ATGCAGGACCAAGAGGATCATCAACATGTGGTGGTGGGGTGCAAGGATCAAATGCAAATGATCATCAAGGGAAAGCGAACAAAGCGTCAACGGCTGCCGTCCCCGCTTAGGCTAACCATGTCAACAACAACTACATCTAATTCCAGTGCTACAACAACAACAACCTCAATTGATCATGAACTCAGGAACAGCACAACAGAAGAAGAGGAGGACATGGCCAATTGTTTGATTCTTTTGGCTCAAGGCAATCATCATCACACACAGAAAAAATTTGCCTCATCAAAGTTACAGCTTGTGGATCTTAACAACAACAACAACAATAAGGAAAGGCTTTACCTTTATGAGTGCAAGACATGTAACAGATGTTTTTCCTCATTTCAAGCACTTGGTGGACATAGAGCAAGTCACAAGAAACTTAAGGCAAATAATGCTGCTGCTTCTTGTGCACCAGATCAAAAGGAAGCAATTACTACCACTTTTGTGAATGACCATCATGGTTTTGAACACCCCACAAACACAAACACAAACACTAATCTTACATTGCAATTATCAAGCAGGGGTTTGTATGGCAGCAGCACTGTGACTCCAACCACAACAAAATCAAAAGTTCATGAGTGTTCGATTTGCGGGGCTGAGTTCCAATCTGGACAAGCCTTGGGGGGACACATGAGGAGGCATAGAATTTCTGTGAGCAATTCAGCTGCAATATCCATGAGTGATATTGGTGCAAATAACCAAGAAGCCAAGAAAGCCAGAAATAATGTTTTGAAGCTGGACTTGAATCTTCCAGCACCTGAGGATGATAACAGCAGGGAATCCAAGTTTCCGTTTCAGTCCAAGGAGAAAGTTATTGTTTTCTCTGCAACTTCTTTGGTGGATTGCCATTACTAA 891 0.422 MQDQEDHQHVVVGCKDQMQMIIKGKRTKRQRLPSPLRLTMSTTTTSNSSATTTTTSIDHELRNSTTEEEEDMANCLILLAQGNHHHTQKKFASSKLQLVDLNNNNNNKERLYLYECKTCNRCFSSFQALGGHRASHKKLKANNAAASCAPDQKEAITTTFVNDHHGFEHPTNTNTNTNLTLQLSSRGLYGSSTVTPTTTKSKVHECSICGAEFQSGQALGGHMRRHRISVSNSAAISMSDIGANNQEAKKARNNVLKLDLNLPAPEDDNSRESKFPFQSKEKVIVFSATSLVDCHY* 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0801 296 Gene3D Classic Zinc Finger 111 226 - -
Lja1g0801 296 PANTHER GATA ZINC FINGER DOMAIN-CONTAINING PROTEIN 15-LIKE 7 296 - -
Lja1g0801 296 Pfam C2H2-type zinc finger 203 228 - -
Lja1g0801 296 Pfam C2H2-type zinc finger 114 138 - -
Lja1g0801 296 PANTHER ZINC FINGER PROTEIN ZAT5 7 296 - -
Lja1g0801 296 ProSitePatterns Zinc finger C2H2 type domain signature. 116 136 IPR013087 -
Lja1g0801 296 ProSitePatterns Zinc finger C2H2 type domain signature. 206 226 IPR013087 -
Lja1g0801 296 SMART c2h2final6 204 226 IPR013087 -
Lja1g0801 296 SMART c2h2final6 114 136 IPR013087 -
Lja1g0801 296 ProSiteProfiles Zinc finger C2H2 type domain profile. 114 141 IPR013087 -
Lja1g0801 296 ProSiteProfiles Zinc finger C2H2 type domain profile. 204 226 IPR013087 -
Lja1g0801 296 MobiDBLite consensus disorder prediction 36 60 - -
Lja1g0801 296 MobiDBLite consensus disorder prediction 36 66 - -
Lja1g0801 296 SUPERFAMILY beta-beta-alpha zinc fingers 113 226 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0801 Lja-Chr1 7753281 7754424 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0801 17 296 C2H2 Transcription Factor Family AT5G04390 37.669 4.80e-56 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lja1g0801 zf-C2H2_6 5.7e-13 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0801 - - gmx:100777739 266.159
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g1038 5 10534347 10535561 Lja1g0801 1 7753281 7754424 ECH
Lja1g0801 1 7753281 7754424 Lja5g1038 5 10534347 10535561 ECH
Lja1g0801 1 7753281 7754424 Lja1g0801 1 7753281 7754424 ECH
Lja3g0912 3 9302024 9303694 Lja1g0801 1 7753281 7754424 ECH
Lja3g3662 3 72717791 72718988 Lja1g0801 1 7753281 7754424 ECH
Lja1g0801 1 7753281 7754424 Lja3g0912 3 9302024 9303694 ECH
Lja1g0801 1 7753281 7754424 Lja3g3662 3 72717791 72718988 ECH