Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0785 ATGGGATTCAAGAGAACCCTCTTTTGGCTTTCTAGCTTTGTCATTCTTTTCTTTTCTATCATAATTGTTCATCATACCCAGATACCTGCCATTAGTCCTCATCAAGATAGTTCTAGTTTTCAGCTTGGAATAATATTTAGCAAGATTACTAAGCTTAGTGGTTCTCAAGATTTTGTTTCTTTGATAACAAGTATTGCAAGGAAACATCATCACTGGAAGAGGCATGAGGACAAATGTGACCAGGTCAAATTGGCTTATAATGTGACTCATGTTTTCACAGTTGACTTAAAGGGGCGTGGTAACTTCAGTAGTGTGCAGAAAGCAATTGATGCTGTTCCTGAATCTAGTTCTGATACCACCCTTATCTTAATCGACTCTGGCACATACAGGGAGAAGGTAGTGGTGCAAGCCAATAAAACAAACTTGATAATTAAAGGTCAAGGGTATCTCAATACAATCATAGAATGGAATGACACTGCCAATTCCACTGGTGGGACATCCTATAGCTACTCTTTTGCTGTCTTTGCTTCTAAGTTCACTGCTTACAACATCAGCTTTAAGAACACAGCTCCTCCACCATCACCAGGAAAGATTGGGGAACAGGCAGTGGCACTGAGAATTACAGGTGATCAGGGTGCATTCTATGGATGTGGGTTTTATGGTGCACAGGACACACTCAATGATGACAGTGGAAGACATTATTTTAAAGAATGTTTCATCGAAGGATCCATTGATTTCATATTTGGAAATGCAAGGTCACTTTATGAGGGCTGTACCATACACTCAATAGCAAAACCAGATTTGGATGGGGTTAGTGGCTCAATTACAGCACAAGGGAGGCAATCAATAAACGAGGAAACAGGGTTTTCATTTGTGAATTGTACCATTCTTGGGACTGGGAATGTGTGGCTTGGAAGAGCTTGGGGTGCTTTCTCCACTGCTGTCTTCTCAAAAACATACATGTCTGAGGTTGTAGCTCCTGAGGGATGGAATGATTGGAGAGATCCCTCCAGAGACCAGACTGTCTTCTTTGGAGAGTACCGTTGTCTAGGACCTGGGGCAAATTACACATCCAGAGTTTCCTATGCAAAGCAACTGAAGGATTATGAAGCAAACTCCTATATGAATATTTCATACATAAATGGAAATGATTGGCTTCTCAATTATTTTGAAAACCATGTTGGTCATTATGATGTATAG 1200 0.405 MGFKRTLFWLSSFVILFFSIIIVHHTQIPAISPHQDSSSFQLGIIFSKITKLSGSQDFVSLITSIARKHHHWKRHEDKCDQVKLAYNVTHVFTVDLKGRGNFSSVQKAIDAVPESSSDTTLILIDSGTYREKVVVQANKTNLIIKGQGYLNTIIEWNDTANSTGGTSYSYSFAVFASKFTAYNISFKNTAPPPSPGKIGEQAVALRITGDQGAFYGCGFYGAQDTLNDDSGRHYFKECFIEGSIDFIFGNARSLYEGCTIHSIAKPDLDGVSGSITAQGRQSINEETGFSFVNCTILGTGNVWLGRAWGAFSTAVFSKTYMSEVVAPEGWNDWRDPSRDQTVFFGEYRCLGPGANYTSRVSYAKQLKDYEANSYMNISYINGNDWLLNYFENHVGHYDV* 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0785 399 Pfam Pectinesterase 94 383 IPR000070 GO:0030599|GO:0042545
Lja1g0785 399 SUPERFAMILY Pectin lyase-like 89 386 IPR011050 -
Lja1g0785 399 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 11 391 - -
Lja1g0785 399 ProSitePatterns Pectinesterase signature 2. 240 249 IPR033131 -
Lja1g0785 399 Gene3D - 85 392 IPR012334 -
Lja1g0785 399 PANTHER PECTINESTERASE 14-RELATED 11 391 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0785 Lja-Chr1 7594354 7599680 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0785 68 386 Carbohydrate Esterase AT1G05310 52.294 7.35e-118 347
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0785 - - gmx:100802034 632.869
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0785 1 7594354 7599680 Lja5g1255 5 12602964 12610060 PCT