Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0784 ATGGTTAAGCCGGAGCAGGAACCCGATCAGGCGCGGAAGGTTTCCGTGGTGAATGGTCACATCGTTTACACGCGATCCAAGCGGGCGCTCGAATTGTGTAACGGATTATCCGAGGACGCGGAGTCCAAGAGGATTAAGGCGAGTGCGGTGAAAACGGATTGCGATGCCGTGGAGGTGAAGAGCGAGGATGTGGAGGTTGCGGTGAGGCCGCCTCGGCGGCGGACGCGATCGGCGTTTAAGGTGAGTGTTGTTGAGTCTGTTGAGAGGGTGGAGAGTGAGTTGGAACAAGGTGGGGCGAGTGGTGTAGGTGATGGTGGAATTGATGGTGCATTGGTGGGTACCGGGGGCAAGATGGAGTTGAAGATGTCGAAGAAGATTGTGGTTAGCAGGAAGCCTACGACTGTGAAGGAGCTTTTCGATACAGGATTGCTTGATGGTGTCTCTGTGGTTTACATGGGCGGCATTAAGAAGACGTCAGGTTTACGGGGTGTTATTAGAGATGGGGGAATATTGTGCTCGTGCAGTCTGTGCAATGGACGCAGGGTTATTCCACCTTCCCAATTTGAGATCCATGCTTGCAAACAATATAGGAGAGCAGCACAGTATATTTGCCTAGAAAATGGGAAGAGCCTGCTTGATCTATTAGGAGCATGCAAGGCAGCACCCCTGCATACTTTGGAGACAGCAGTTCAAAATTTTGTTGGTTCTCCAGCTGAAGAAAAATATTTTACCTGTAAAAGGTGCAAAGGGTGTTTCCCTTCTTCGTGTGTGGAAAGAGTGGGGCCTATTTGCAGTTCTTGTGTGGAATCAAAGAAATCTGAAGAAAGTTCAAAAAATGTCGTTGGCAAAAGAGTCCGGTCTCCTCGACCAGTACCGCTCTCCAATCCATCCTGTACTCCTGATCTGTCTATCTCCTCTCAAAGTAAGGGACACTGGAAGAAAAGAACAAAGTCATCAAAAAGGGTTAGCAGCTCAAATTCTTCCAAGAGTGCTTCTGTACCTATTCTACCCCGGAAGAAAATTTTGACAAAGATGAAAAAAAGGTCTATGTCGGTAAAGTTGAAGGCCCCGAAAGTTAGTTCAAATTCAAAATGTTTATCTTCACAAAATAAGATTCAGTGGAAAATAACTAAGAAGGATCAGAGGTTGCATAAGTTAGTTTTTGAGGAAGATGGATTGCCTGATGGAACTGAAGTAGCTTATTATGCACGCGGAAAGAGATTGCTTGAAGGCTACAAAATGGGTTCTGGAATTGTTTGTCGATGCTGCAACACTGTGGTCAGCCCCTCACAATTTGAGGTCCATGCGGGTTGGGCTTCTCGCAAGAAACCTTATGCATATATTTACACTTCAAATGGGGTGTCTCTCCATGAGTTTGCAATATCTCTCTCAAAAGATCGAAAGTACTCTGCAAAGGACAATGATGATCTATGCGTTGTTTGTTGGGATGGTGGAAACCTGTTGCTTTGTGATGGATGCCCAAGAGCATTTCATAAAGAATGTGCATCTCTATCAAGTATTCCACGTGGTGACTGGTACTGTCAATTTTGCCAAAACATGTTCCAGAGAGAAAAGTTTGTGGCATACAATGCCAATGCATGGGCAGCTGGAAGGGTTGAAGGAGTTGATCCTATTAACCAGATAACCAATAGATGCATTCGCATAGTTAAAGACATCGAATCTGAGCTTAGTGGGTGCGCTTTATGCAGGGGTGTTGACTTCAGCAAATCCGGCTTTGGTCCTCGCACAATAATACTCTGTGACCAGTGTGAAAAGGAGTATCATGTTGGCTGTTTGAGAGATCACAAAATGGCATATTTAAAGGAATTGCCCAAAGGGAATTGGCTTTGTTGTAAGGATTGCACGAGAATACATTCTACTCTGGAGAACGTTTTGGTTAAGGGGGCTGAGAGACTCCCTGAATCCCTCTTGGATGTTATAAAACAAAAGCAAGTGGAAAAAGGATTAGATCCCATCAATGATAATGATGTAAGATGGAGGCTTCTTAATGGAAAAATTGCTTCCCGTGAAACGAGGCCATTGCTTTTGGAGGCCGTTTCGATATTTCATGAATGCTTCAATCCTATAGTTGACGCAGCTAGTGGACGTGACCTTATTCCAGCCATGGTTTATGGAAGGAATGTGCGGGGTCAGGAGTTTGGAGGAATGTATTGTGCATTACTAGTAGTCAATTCATCTGTGGTATCTGCGGCCATGCTTCGAATTTTCGGCTCAGATGTAGCTGAACTTCCTTTAGTTGCAACAAGTAACGGGAATCACGGGAAGGGCTACTTCCAAACACTCTTCTCCTGCATTGAGAGGCTTTTGGCTTTCATGAATGTGAAGAGCCTTGTACTGCCAGCTGCAGAAGAAGCAGAATCAATATGGACCGATAAATTTGGGTTTAGCAGGATGAAGCCAGATGAGCTTTCCGACTATAGGAAGAACTTCAATCAGATGGTGACATTCAAAGGGACAAATATGCTTCATAAATTGGTGCCTCCATGTCGAATCATCAGTAATCAAGCATGA 2532 0.4494 MVKPEQEPDQARKVSVVNGHIVYTRSKRALELCNGLSEDAESKRIKASAVKTDCDAVEVKSEDVEVAVRPPRRRTRSAFKVSVVESVERVESELEQGGASGVGDGGIDGALVGTGGKMELKMSKKIVVSRKPTTVKELFDTGLLDGVSVVYMGGIKKTSGLRGVIRDGGILCSCSLCNGRRVIPPSQFEIHACKQYRRAAQYICLENGKSLLDLLGACKAAPLHTLETAVQNFVGSPAEEKYFTCKRCKGCFPSSCVERVGPICSSCVESKKSEESSKNVVGKRVRSPRPVPLSNPSCTPDLSISSQSKGHWKKRTKSSKRVSSSNSSKSASVPILPRKKILTKMKKRSMSVKLKAPKVSSNSKCLSSQNKIQWKITKKDQRLHKLVFEEDGLPDGTEVAYYARGKRLLEGYKMGSGIVCRCCNTVVSPSQFEVHAGWASRKKPYAYIYTSNGVSLHEFAISLSKDRKYSAKDNDDLCVVCWDGGNLLLCDGCPRAFHKECASLSSIPRGDWYCQFCQNMFQREKFVAYNANAWAAGRVEGVDPINQITNRCIRIVKDIESELSGCALCRGVDFSKSGFGPRTIILCDQCEKEYHVGCLRDHKMAYLKELPKGNWLCCKDCTRIHSTLENVLVKGAERLPESLLDVIKQKQVEKGLDPINDNDVRWRLLNGKIASRETRPLLLEAVSIFHECFNPIVDAASGRDLIPAMVYGRNVRGQEFGGMYCALLVVNSSVVSAAMLRIFGSDVAELPLVATSNGNHGKGYFQTLFSCIERLLAFMNVKSLVLPAAEEAESIWTDKFGFSRMKPDELSDYRKNFNQMVTFKGTNMLHKLVPPCRIISNQA* 844
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0784 843 CDD PHD1_AIRE 477 517 - -
Lja1g0784 843 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 463 550 IPR013083 -
Lja1g0784 843 Pfam PHD-finger 478 519 IPR019787 -
Lja1g0784 843 Pfam Tify domain binding domain 163 215 IPR032308 -
Lja1g0784 843 Pfam Tify domain binding domain 414 459 IPR032308 -
Lja1g0784 843 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 562 624 IPR013083 -
Lja1g0784 843 PANTHER AUTOIMMUNE REGULATOR 41 839 - -
Lja1g0784 843 SMART PHD_3 477 518 IPR001965 -
Lja1g0784 843 SMART PHD_3 565 622 IPR001965 -
Lja1g0784 843 ProSiteProfiles Zinc finger PHD-type profile. 475 520 IPR019787 -
Lja1g0784 843 MobiDBLite consensus disorder prediction 278 336 - -
Lja1g0784 843 ProSitePatterns Zinc finger PHD-type signature. 478 517 IPR019786 -
Lja1g0784 843 SUPERFAMILY FYVE/PHD zinc finger 557 619 IPR011011 -
Lja1g0784 843 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 716 808 IPR016181 -
Lja1g0784 843 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN 41 839 - -
Lja1g0784 843 SUPERFAMILY FYVE/PHD zinc finger 464 523 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0784 Lja-Chr1 7584357 7592826 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0784 124 839 PHD Transcription Factor Family AT2G36720 53.825 0.0 804
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lja1g0784 TDBD 1.3e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0784 - - gmx:100802562 1330.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0784 1 7584357 7592826 Lja5g2585 5 51054387 51063123 PCT
Lja5g1319 5 13234172 13239197 Lja1g0784 1 7584357 7592826 PCT