Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0781 ATGAACTTCAAGGTAGCCAAAATAATGTTAGGCCCTTACACCCCTTTTATCATCTTTTCTGCTGTTTTAATTGGTGCCATTCTAGCATTAGCAGCATACCGTCTCATTCACTTGATCTATTACATCATGTCCCAAAGAGGACAACATAGGAACAACAACATAAGGCATGTGAAGGTCAAGAGTGGTGGGGTCCCAGTTGAAATCCTCAACAAGATCCCAATTCTCAAATTCTCATCAACCCAAAACAGTGAAGAAGAAATCTTTCTTTTGGATCATAGTGAATGCTACATTTGCCTTGGAGAATGGGAAGATGGTGAACAAGTGAGGTTGTTTCCTTCATGTAACCATGCATTCCATGCTTCTTGCATCGAAGCATGGTTCAAGATCCATGCAAATTGCCCTGTTTGTCGTTCACCCATCATGTGTGAACGACTGACTGGGCATGCTTCAGAACAAAGGGTATGCTCGCATGTGCCTGAAACTCCAAGTAATCATCATAATGATAATCAAGTCTTGCCTGCTCATCATCATCAATCAATGAATAATGATGTTGCTGGTTCCATGTCAAGATTTCAACGACCATGTCCTCCTCTGTTGCTTCACTCCGTTTCTTTCTCCACCTCAAACATGCCGAAAAAGCCACGTGTTGTGGGAAGGTGGTTGAAGAGATCTTTGTCTGAGAATCAGTCATCTATATATGTTGGAATTACCACCATACAAAGAGGTTGTGAAACGGCTTCCACTACTACTACTTCATCTACCATAGAGGTTGTGATGAAATCAAGACCAATTAGGCATCTTGATCGAATGTCTTCATTGTTGATGAGATCCTTCTCGCAATTTCGGAATATTGGATCTGTTAGATCTAATCAGATTCTTCCAAATTGA 888 0.4099 MNFKVAKIMLGPYTPFIIFSAVLIGAILALAAYRLIHLIYYIMSQRGQHRNNNIRHVKVKSGGVPVEILNKIPILKFSSTQNSEEEIFLLDHSECYICLGEWEDGEQVRLFPSCNHAFHASCIEAWFKIHANCPVCRSPIMCERLTGHASEQRVCSHVPETPSNHHNDNQVLPAHHHQSMNNDVAGSMSRFQRPCPPLLLHSVSFSTSNMPKKPRVVGRWLKRSLSENQSSIYVGITTIQRGCETASTTTTSSTIEVVMKSRPIRHLDRMSSLLMRSFSQFRNIGSVRSNQILPN* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0781 295 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 14 284 IPR044675 -
Lja1g0781 295 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 49 142 IPR013083 -
Lja1g0781 295 Pfam Ring finger domain 94 137 IPR001841 -
Lja1g0781 295 CDD RING-H2_EL5_like 94 137 - -
Lja1g0781 295 ProSiteProfiles Zinc finger RING-type profile. 95 137 IPR001841 -
Lja1g0781 295 SUPERFAMILY RING/U-box 69 142 - -
Lja1g0781 295 PANTHER RING-H2 FINGER PROTEIN ATL73-LIKE 14 284 - -
Lja1g0781 295 SMART ring_2 95 136 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0781 Lja-Chr1 7558603 7559490 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0781 17 153 C3H Transcription Factor Family AT3G10910 32.414 1.36e-19 82.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0781 - - lja:Lj1g3v4691590.1 518.85